Variant report

Variant	rs11165090
Chromosome Location	chr1:94632513-94632514
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10443184	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1048866	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782980	0.82[EUR][1000 genomes]
rs10874840	0.89[AFR][1000 genomes];0.82[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs11196	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411698	0.96[CEU][hapmap];0.92[CHB][hapmap];0.95[JPT][hapmap];0.95[YRI][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1411700	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1411701	0.96[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1929130	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35791244	0.88[AFR][1000 genomes];0.93[EUR][1000 genomes]
rs3789687	0.83[EUR][1000 genomes]
rs3814020	0.81[EUR][1000 genomes]
rs6541340	0.84[CEU][hapmap];0.86[YRI][hapmap];0.80[AFR][1000 genomes];0.91[EUR][1000 genomes]
rs6541411	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs6674226	0.88[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6691702	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7536759	0.88[AFR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94626600-94635800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94626800-94634800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr1:94626800-94635200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:94626800-94636800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr1:94626800-94636800	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr1:94626800-94639200	Weak transcription	NHLF	lung
7	chr1:94626800-94639400	Weak transcription	Psoas Muscle	Psoas
8	chr1:94626800-94639400	Weak transcription	NHEK	skin
9	chr1:94626800-94643400	Weak transcription	Fetal Heart	heart
10	chr1:94627000-94634200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr1:94627000-94634200	Weak transcription	HSMM	muscle
12	chr1:94627000-94634200	Weak transcription	HUVEC	blood vessel
13	chr1:94627000-94634400	Weak transcription	Muscle Satellite Cultured Cells	--
14	chr1:94627000-94634600	Weak transcription	Osteobl	bone
15	chr1:94627000-94636200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr1:94627000-94639400	Weak transcription	HSMMtube	muscle
17	chr1:94627200-94634200	Weak transcription	NH-A	brain
18	chr1:94627200-94634400	Weak transcription	NHDF-Ad	bronchial
19	chr1:94627400-94635000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr1:94629800-94639400	Weak transcription	Spleen	Spleen
21	chr1:94630800-94639400	Weak transcription	Gastric	stomach
22	chr1:94631400-94639400	Weak transcription	Skeletal Muscle Male	skeletal muscle
23	chr1:94631800-94636600	Weak transcription	Fetal Kidney	kidney
24	chr1:94631800-94639800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr1:94631800-94646600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr1:94632200-94639400	Weak transcription	Pancreas	Pancrea
27	chr1:94632400-94632600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr1:94632400-94636200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links