Variant report

Variant	rs10782980
Chromosome Location	chr1:94697749-94697750
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94692312..94694422-chr1:94696835..94699203,2	MCF-7	breast:
2	chr1:94664561..94667035-chr1:94696227..94698002,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10158261	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10443184	0.86[CEU][hapmap];0.84[EUR][1000 genomes]
rs1048866	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs10874840	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11165090	0.82[EUR][1000 genomes]
rs11165099	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11165101	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11165108	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11165110	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11196	0.82[CEU][hapmap];0.82[EUR][1000 genomes]
rs12750249	0.97[ASN][1000 genomes]
rs1411698	0.84[EUR][1000 genomes]
rs1411700	0.82[EUR][1000 genomes]
rs1411701	0.82[EUR][1000 genomes]
rs1687935	0.93[ASN][1000 genomes]
rs1756245	0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1756248	0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1929130	0.83[EUR][1000 genomes]
rs2077424	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2210161	0.80[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35791244	0.87[EUR][1000 genomes]
rs3789687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3814020	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6541340	0.95[CEU][hapmap];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs6541411	0.85[EUR][1000 genomes]
rs6674226	0.80[EUR][1000 genomes]
rs6697764	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs67070250	1.00[ASN][1000 genomes]
rs7536759	0.86[EUR][1000 genomes]
rs7540185	0.83[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10782980	NENF	Cis_chr	lymphoblastoid	RTeQTL

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94668800-94699000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
2	chr1:94673800-94698600	Weak transcription	Fetal Muscle Trunk	muscle
3	chr1:94673800-94701000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:94684800-94698600	Weak transcription	Left Ventricle	heart
5	chr1:94685000-94701000	Weak transcription	Right Ventricle	heart
6	chr1:94685200-94700600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:94685200-94700800	Weak transcription	NHLF	lung
8	chr1:94685200-94701000	Weak transcription	Psoas Muscle	Psoas
9	chr1:94685800-94699400	Weak transcription	Fetal Muscle Leg	muscle
10	chr1:94692600-94700200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
11	chr1:94694400-94698400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:94694800-94699400	Weak transcription	Stomach Mucosa	stomach
13	chr1:94695800-94697800	Enhancers	Adipose Nuclei	Adipose
14	chr1:94696200-94698000	Enhancers	Skeletal Muscle Male	skeletal muscle
15	chr1:94696200-94701200	Enhancers	Fetal Heart	heart
16	chr1:94696400-94698000	Enhancers	Skeletal Muscle Female	skeletal muscle
17	chr1:94696400-94699400	Genic enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr1:94696400-94700400	Enhancers	A549	lung
19	chr1:94696600-94698400	Enhancers	NHDF-Ad	bronchial
20	chr1:94696600-94698800	Enhancers	NH-A	brain
21	chr1:94696800-94698400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr1:94696800-94699600	Weak transcription	Pancreatic Islets	Pancreatic Islet
23	chr1:94697000-94698800	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr1:94697000-94701400	Flanking Active TSS	HUVEC	blood vessel
25	chr1:94697200-94697800	Weak transcription	HepG2	liver
26	chr1:94697200-94698000	Bivalent Enhancer	Primary hematopoietic stem cells	blood
27	chr1:94697200-94698000	Enhancers	HMEC	breast
28	chr1:94697200-94698000	Enhancers	Osteobl	bone
29	chr1:94697200-94698800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
30	chr1:94697200-94699200	Enhancers	NHEK	skin
31	chr1:94697200-94699600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
32	chr1:94697200-94700200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr1:94697200-94700200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
34	chr1:94697400-94698000	Weak transcription	HSMM	muscle
35	chr1:94697400-94698400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
36	chr1:94697400-94700800	Weak transcription	HSMMtube	muscle
37	chr1:94697600-94698000	Flanking Active TSS	Muscle Satellite Cultured Cells	--
38	chr1:94697600-94698200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr1:94697600-94698800	Weak transcription	Liver	Liver
40	chr1:94697600-94699200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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