Variant report

Variant	rs1756245
Chromosome Location	chr1:94724719-94724720
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10158261	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10782980	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10874849	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165101	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165108	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165110	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165122	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165132	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1120667	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580251	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11585556	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12089927	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12741519	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12750249	1.00[ASN][1000 genomes]
rs12756032	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1620975	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1628833	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1687924	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1687927	0.86[AMR][1000 genomes]
rs1687935	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1687941	0.82[AMR][1000 genomes]
rs1687951	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687954	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687970	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1756248	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1765618	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765621	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765626	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1765628	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765632	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765649	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1765650	0.80[AMR][1000 genomes]
rs2065971	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2065972	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2077424	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2172133	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2210161	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2786906	0.88[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3789687	0.84[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3814020	0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6541340	0.81[CEU][hapmap];0.83[GIH][hapmap]
rs6697764	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs67070250	0.97[ASN][1000 genomes]
rs7540185	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs902338	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94721600-94726400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
2	chr1:94723000-94725800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr1:94723000-94725800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:94723000-94725800	Enhancers	HMEC	breast
5	chr1:94723000-94726800	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
6	chr1:94723200-94725000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr1:94723400-94726200	Enhancers	Osteobl	bone
8	chr1:94723400-94726800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:94723600-94725400	Enhancers	NHEK	skin
10	chr1:94723600-94726000	Enhancers	NH-A	brain
11	chr1:94723600-94726800	Enhancers	HSMM	muscle
12	chr1:94723600-94726800	Enhancers	NHDF-Ad	bronchial
13	chr1:94723800-94726600	Enhancers	HSMMtube	muscle
14	chr1:94724000-94724800	Enhancers	Stomach Mucosa	stomach
15	chr1:94724000-94725200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr1:94724000-94725400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr1:94724000-94725400	Enhancers	Liver	Liver
18	chr1:94724000-94725400	Enhancers	Skeletal Muscle Male	skeletal muscle
19	chr1:94724000-94725600	Enhancers	Hela-S3	cervix
20	chr1:94724000-94725800	Enhancers	Adipose Nuclei	Adipose
21	chr1:94724000-94725800	Enhancers	Placenta Amnion	Placenta Amnion
22	chr1:94724000-94725800	Enhancers	Skeletal Muscle Female	skeletal muscle
23	chr1:94724000-94726200	Enhancers	NHLF	lung
24	chr1:94724000-94726400	Enhancers	HUVEC	blood vessel
25	chr1:94724200-94725000	Weak transcription	Psoas Muscle	Psoas
26	chr1:94724200-94726000	Enhancers	HepG2	liver
27	chr1:94724400-94724800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
28	chr1:94724400-94725000	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
29	chr1:94724400-94725000	Bivalent Enhancer	HUES6 Cell Line	embryonic stem cell
30	chr1:94724400-94725000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr1:94724400-94725600	Enhancers	A549	lung
32	chr1:94724400-94727000	Enhancers	Muscle Satellite Cultured Cells	--
33	chr1:94724600-94725000	Bivalent Enhancer	ES-WA7 Cell Line	embryonic stem cell

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