Variant report

Variant	rs1687924
Chromosome Location	chr1:94804680-94804681
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:40)

rs_ID	r²[population]
rs10158261	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs10874849	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11165101	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs11165108	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11165110	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11165122	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11165132	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1120667	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11580251	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11585556	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12089927	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12741519	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12756032	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1620975	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1628833	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1687927	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1687935	0.90[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1687941	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1687951	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1687954	0.81[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1687970	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1756245	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1756248	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1765618	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1765621	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1765626	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs1765628	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1765632	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1765649	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1765650	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2065971	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2065972	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2077424	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2172133	0.90[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2210161	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2391468	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2786906	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6697764	0.91[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7540185	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs902338	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94796000-94804800	Weak transcription	Cortex derived primary cultured neurospheres	brain
2	chr1:94796000-94807800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:94796600-94804800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr1:94799000-94805200	Weak transcription	Lung	lung
5	chr1:94799200-94812000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr1:94800000-94804800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr1:94801000-94804800	Weak transcription	HepG2	liver
8	chr1:94801600-94804800	Weak transcription	Brain Anterior Caudate	brain
9	chr1:94801600-94807000	Enhancers	Placenta	Placenta
10	chr1:94802600-94805200	Weak transcription	Placenta Amnion	Placenta Amnion
11	chr1:94803600-94806000	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr1:94803600-94806200	Enhancers	Primary monocytes fromperipheralblood	blood
13	chr1:94803800-94804800	Enhancers	Monocytes-CD14+_RO01746	blood
14	chr1:94803800-94806000	Enhancers	Primary hematopoietic stem cells short term culture	blood
15	chr1:94804000-94804800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr1:94804000-94804800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr1:94804000-94804800	Weak transcription	Thymus	Thymus
18	chr1:94804400-94805800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr1:94804600-94806400	Enhancers	Fetal Thymus	thymus

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