Variant report

Variant	rs11165108
Chromosome Location	chr1:94748833-94748834
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:94741320..94745215-chr1:94746019..94749869,4	K562	blood:

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10158261	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782980	0.90[CEU][hapmap];0.81[YRI][hapmap];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10874849	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165101	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165110	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165122	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165132	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1120667	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580251	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11585556	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12089927	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12741519	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12750249	0.99[ASN][1000 genomes]
rs12756032	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1620975	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1628833	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1687924	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1687927	0.89[AMR][1000 genomes]
rs1687935	0.94[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687941	0.84[AMR][1000 genomes]
rs1687951	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687954	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687970	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1756245	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756248	0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765618	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765621	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765626	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1765628	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765632	0.90[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765649	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1765650	0.82[AMR][1000 genomes]
rs2065971	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2065972	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2077424	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172133	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2210161	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786906	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3789687	0.91[CEU][hapmap];1.00[YRI][hapmap];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814020	0.81[AMR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541340	0.85[CEU][hapmap]
rs6697764	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070250	0.96[ASN][1000 genomes]
rs7540185	0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs902338	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94738400-94750000	Weak transcription	Pancreas	Pancrea
2	chr1:94738400-94750000	Weak transcription	HMEC	breast
3	chr1:94738600-94750200	Weak transcription	Fetal Kidney	kidney
4	chr1:94738800-94750600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr1:94745200-94750400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr1:94747200-94750200	Weak transcription	Stomach Mucosa	stomach
7	chr1:94747400-94749200	Weak transcription	Fetal Lung	lung
8	chr1:94747400-94750600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr1:94747600-94749800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr1:94747600-94749800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr1:94747600-94750000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr1:94747600-94750000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:94747600-94750000	Weak transcription	HSMM	muscle
14	chr1:94747600-94750000	Weak transcription	NH-A	brain
15	chr1:94747600-94750000	Weak transcription	NHLF	lung
16	chr1:94747600-94750000	Weak transcription	Osteobl	bone
17	chr1:94747800-94749600	Weak transcription	Muscle Satellite Cultured Cells	--
18	chr1:94747800-94749800	Weak transcription	HUVEC	blood vessel
19	chr1:94747800-94750200	Weak transcription	Fetal Stomach	stomach
20	chr1:94748200-94750400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr1:94748400-94750000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr1:94748600-94750000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:94748600-94750000	Weak transcription	Fetal Heart	heart
24	chr1:94748800-94750200	Enhancers	NHDF-Ad	bronchial

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