Variant report

Variant	rs1765650
Chromosome Location	chr1:94861387-94861388
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:94859969..94862064-chr1:94864707..94866674,2	MCF-7	breast:
2	chr1:94851431..94853630-chr1:94859624..94862192,2	K562	blood:
3	chr1:94851431..94853630-chr1:94859546..94862192,3	K562	blood:

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-ARHGAP29-6	chr1:94860863-94862328	NONHSAT004590

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10158261	0.81[AMR][1000 genomes]
rs10874849	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165101	0.81[AMR][1000 genomes]
rs11165108	0.82[AMR][1000 genomes]
rs11165110	0.84[AMR][1000 genomes]
rs11165122	0.86[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11165132	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1120667	0.92[AMR][1000 genomes];0.81[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11580251	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11585556	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12089927	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs12741519	0.88[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs12756032	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1620975	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1628833	0.91[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1687924	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs1687927	0.91[AMR][1000 genomes]
rs1687935	0.81[AMR][1000 genomes]
rs1687941	0.87[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs1687951	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1687954	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1687970	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1756245	0.80[AMR][1000 genomes]
rs1756248	0.80[AMR][1000 genomes]
rs1765618	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1765621	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1765626	0.87[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1765628	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1765632	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1765649	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2065971	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2065972	0.83[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs2077424	0.82[AMR][1000 genomes]
rs2172133	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2391468	0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs2786906	0.90[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6697764	0.82[AMR][1000 genomes]
rs7540185	0.88[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs902338	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv871097	chr1:94850443-94941890	Weak transcription Active TSS Enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94859400-94861800	Enhancers	Fetal Thymus	thymus
2	chr1:94859800-94861600	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr1:94859800-94862000	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr1:94859800-94862200	Enhancers	HepG2	liver
5	chr1:94860000-94861600	Enhancers	Thymus	Thymus
6	chr1:94860000-94861800	Enhancers	HUES6 Cell Line	embryonic stem cell
7	chr1:94860000-94862000	Enhancers	iPS-15b Cell Line	embryonic stem cell
8	chr1:94860200-94861400	Enhancers	ES-WA7 Cell Line	embryonic stem cell
9	chr1:94860200-94861600	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr1:94860200-94861800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr1:94860200-94861800	Enhancers	H9 Cell Line	embryonic stem cell
12	chr1:94860200-94862000	Enhancers	HUES64 Cell Line	embryonic stem cell
13	chr1:94860400-94861400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr1:94860400-94861400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr1:94860400-94861800	Enhancers	HUES48 Cell Line	embryonic stem cell
16	chr1:94860600-94861400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr1:94861000-94861600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr1:94861000-94861600	Enhancers	Fetal Intestine Small	intestine
19	chr1:94861000-94861800	Enhancers	Stomach Mucosa	stomach
20	chr1:94861000-94862400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr1:94861200-94861400	Enhancers	Gastric	stomach
22	chr1:94861200-94861600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr1:94861200-94862000	Enhancers	iPS-20b Cell Line	embryonic stem cell

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