Variant report

Variant	rs10158261
Chromosome Location	chr1:94734351-94734352
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10782980	0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10874849	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165101	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165108	0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165110	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165122	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165132	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1120667	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580251	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11585556	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12089927	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12741519	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12750249	0.99[ASN][1000 genomes]
rs12756032	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1620975	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1628833	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1687924	0.90[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1687927	0.88[AMR][1000 genomes]
rs1687935	0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687941	0.85[AMR][1000 genomes]
rs1687951	0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687954	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687970	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1756245	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756248	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765618	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765621	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765626	0.85[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1765628	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765632	0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1765649	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1765650	0.81[AMR][1000 genomes]
rs2065971	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2065972	0.82[AMR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2077424	0.98[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172133	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2210161	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2786906	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3789687	0.80[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs3814020	0.80[AFR][1000 genomes];0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6697764	0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070250	0.96[ASN][1000 genomes]
rs7540185	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs902338	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94725800-94742600	Weak transcription	Placenta Amnion	Placenta Amnion
2	chr1:94730800-94743600	Weak transcription	Lung	lung
3	chr1:94731000-94734800	Weak transcription	Stomach Mucosa	stomach
4	chr1:94731600-94736000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:94731600-94740200	Weak transcription	Adipose Nuclei	Adipose
6	chr1:94731800-94735200	Weak transcription	NHEK	skin
7	chr1:94731800-94735600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr1:94731800-94735800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
9	chr1:94731800-94735800	Weak transcription	HSMM	muscle
10	chr1:94731800-94737200	Weak transcription	Spleen	Spleen
11	chr1:94732000-94735200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
12	chr1:94732000-94735600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
13	chr1:94732000-94735600	Weak transcription	NH-A	brain
14	chr1:94732000-94735800	Weak transcription	NHLF	lung
15	chr1:94732000-94735800	Weak transcription	Osteobl	bone
16	chr1:94732200-94734600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr1:94732200-94735200	Weak transcription	HMEC	breast
18	chr1:94732200-94735200	Weak transcription	HUVEC	blood vessel
19	chr1:94732200-94735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr1:94732200-94735600	Weak transcription	Muscle Satellite Cultured Cells	--
21	chr1:94732200-94736000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr1:94732200-94736200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr1:94732400-94735800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
24	chr1:94732400-94736200	Weak transcription	HSMMtube	muscle
25	chr1:94732600-94735800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr1:94733000-94735600	Weak transcription	NHDF-Ad	bronchial
27	chr1:94734200-94736000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
28	chr1:94734200-94748600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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