Variant report

Variant	rs11165110
Chromosome Location	chr1:94752469-94752470
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:46)

rs_ID	r²[population]
rs10158261	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10782980	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.81[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10874849	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165101	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11165108	0.99[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11165122	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11165132	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1120667	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11580251	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11585556	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12089927	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs12741519	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12750249	0.99[ASN][1000 genomes]
rs12756032	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1620975	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1628833	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1687924	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1687927	0.91[AMR][1000 genomes]
rs1687935	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1687941	0.86[AMR][1000 genomes]
rs1687951	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687954	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1687970	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1756245	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1756248	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1765618	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765621	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765626	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs1765628	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765632	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs1765649	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs1765650	0.84[AMR][1000 genomes]
rs2065971	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2065972	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2077424	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2172133	0.95[AMR][1000 genomes];0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2210161	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2391468	0.80[AMR][1000 genomes]
rs2786906	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs3789687	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs3814020	0.82[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6541340	0.84[CEU][hapmap];0.85[GIH][hapmap]
rs6697764	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs67070250	0.96[ASN][1000 genomes]
rs7540185	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs902338	0.91[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428510	chr1:94709575-94866655	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94749600-94752800	Enhancers	Muscle Satellite Cultured Cells	--
2	chr1:94749800-94752800	Enhancers	HUVEC	blood vessel
3	chr1:94749800-94753000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr1:94750000-94752600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr1:94750000-94752600	Enhancers	HMEC	breast
6	chr1:94750000-94752800	Enhancers	NHEK	skin
7	chr1:94750000-94753000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:94750000-94753000	Enhancers	NHLF	lung
9	chr1:94750200-94752800	Enhancers	Stomach Mucosa	stomach
10	chr1:94750400-94752600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr1:94750400-94752800	Enhancers	Duodenum Mucosa	Duodenum
12	chr1:94750600-94752600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:94750600-94752600	Enhancers	NHDF-Ad	bronchial
14	chr1:94750600-94753000	Enhancers	Small Intestine	intestine
15	chr1:94750800-94753000	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr1:94751000-94752600	Weak transcription	Fetal Stomach	stomach
17	chr1:94751800-94752600	Weak transcription	Osteobl	bone
18	chr1:94752200-94752800	Enhancers	Fetal Heart	heart
19	chr1:94752400-94752600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr1:94752400-94752600	Enhancers	Fetal Intestine Small	intestine

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links