Variant report

Variant	rs6541411
Chromosome Location	chr1:94611145-94611146
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10443184	0.87[EUR][1000 genomes]
rs1048866	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs10782980	0.85[EUR][1000 genomes]
rs10874840	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11165090	0.82[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs11196	0.85[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1411698	0.87[EUR][1000 genomes]
rs1411700	0.81[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1411701	0.83[AFR][1000 genomes];0.89[EUR][1000 genomes]
rs1541098	0.90[ASN][1000 genomes]
rs1929130	0.88[EUR][1000 genomes]
rs35791244	0.93[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs3789687	0.84[EUR][1000 genomes]
rs3814020	0.84[EUR][1000 genomes]
rs6541340	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6541412	0.96[ASN][1000 genomes]
rs6674226	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6691702	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs7536759	0.93[AFR][1000 genomes];0.94[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv871416	chr1:94566311-94635028	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv871210	chr1:94579426-94629643	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:94600600-94612200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:94608000-94614400	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr1:94608400-94613800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:94608400-94632400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:94609800-94612400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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