Variant report

Variant	rs10456193
Chromosome Location	chr6:14010156-14010157
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14009591..14012613-chr6:14015214..14017538,3	K562	blood:
2	chr6:14008164..14010446-chr6:14020010..14022121,2	K562	blood:

Extended variants
information (count: 35 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016111	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10949196	0.94[ASN][1000 genomes]
rs12154001	0.81[AMR][1000 genomes]
rs12154004	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12154107	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs12154108	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs1970012	0.82[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs1997681	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs1999198	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs35314198	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4712220	0.93[ASN][1000 genomes]
rs4715870	0.89[ASN][1000 genomes]
rs4715871	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs4715872	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs4715873	0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4715874	0.80[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6912313	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6913804	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6930272	0.90[ASN][1000 genomes]
rs6936037	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs6939259	0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6941760	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7741855	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs7754095	0.82[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9349919	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9367802	0.81[AMR][1000 genomes]
rs9367803	0.81[AMR][1000 genomes]
rs9367805	0.83[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs9367807	0.81[AMR][1000 genomes]
rs9370694	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9382890	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9396425	0.83[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9476419	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv600996	chr6:13954632-14014793	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
2	esv2762579	chr6:14009619-14011791	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs10456193	C6orf114	cis	cerebellum	SCAN
rs10456193	GFOD1	cis	cerebellum	SCAN

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14003000-14012800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr6:14008200-14011000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:14008600-14010400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr6:14008600-14011000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:14009000-14010600	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr6:14009200-14010800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:14009200-14011000	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr6:14009400-14010400	Enhancers	H9 Cell Line	embryonic stem cell
9	chr6:14009400-14010400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
10	chr6:14009400-14010600	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr6:14009600-14010200	Enhancers	ES-I3 Cell Line	embryonic stem cell
12	chr6:14009600-14010600	Enhancers	H1 Cell Line	embryonic stem cell
13	chr6:14009800-14010200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr6:14009800-14010200	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
15	chr6:14010000-14010800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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