Variant report

Variant	rs10949196
Chromosome Location	chr6:14017993-14017994
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14016910..14018943-chr6:14020020..14021629,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016111	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10456193	0.94[ASN][1000 genomes]
rs12154001	0.84[EUR][1000 genomes]
rs12154004	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12154107	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12154108	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1970012	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997681	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1999198	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35314198	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4712220	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715870	0.94[ASN][1000 genomes]
rs4715871	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4715872	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715873	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715874	0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6912313	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6913804	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6930272	0.83[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6936037	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939259	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6941760	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7741855	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7754095	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9349919	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367802	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9367803	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9367805	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9367807	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9370694	0.84[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9382890	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9396425	0.82[AMR][1000 genomes];0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476419	0.83[EUR][1000 genomes];0.99[ASN][1000 genomes]

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14016200-14018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr6:14016200-14018200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr6:14016400-14018000	Enhancers	Stomach Smooth Muscle	stomach
4	chr6:14016400-14018400	Enhancers	Cortex derived primary cultured neurospheres	brain
5	chr6:14016400-14018600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
6	chr6:14016400-14018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr6:14016600-14018000	Enhancers	ES-I3 Cell Line	embryonic stem cell
8	chr6:14016600-14018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr6:14016600-14018200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr6:14016600-14018200	Enhancers	Fetal Lung	lung
11	chr6:14016800-14018000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
12	chr6:14016800-14018200	Enhancers	Fetal Brain Female	brain
13	chr6:14016800-14021200	Weak transcription	K562	blood
14	chr6:14017000-14018000	Enhancers	H9 Cell Line	embryonic stem cell
15	chr6:14017000-14018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
16	chr6:14017000-14018000	Weak transcription	Pancreas	Pancrea
17	chr6:14017000-14018200	Enhancers	Fetal Brain Male	brain
18	chr6:14017200-14018000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr6:14017200-14018000	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
20	chr6:14017200-14018000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr6:14017200-14018600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr6:14017400-14018000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
23	chr6:14017400-14018000	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:14017400-14020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr6:14017400-14020800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr6:14017600-14018000	Enhancers	Brain Hippocampus Middle	brain
27	chr6:14017600-14018200	Enhancers	H1 Cell Line	embryonic stem cell
28	chr6:14017800-14018000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
29	chr6:14017800-14018000	Flanking Bivalent TSS/Enh	HUES48 Cell Line	embryonic stem cell
30	chr6:14017800-14018000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
31	chr6:14017800-14018000	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
32	chr6:14017800-14018000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr6:14017800-14018000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr6:14017800-14018200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
35	chr6:14017800-14018200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr6:14017800-14020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links