Variant report

Variant	rs4715872
Chromosome Location	chr6:14018762-14018763
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:14018343..14023013-chr6:14024168..14030575,8	K562	blood:
2	chr6:14016910..14018943-chr6:14020020..14021629,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016111	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10456193	0.83[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs10949196	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12154001	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12154004	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12154107	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12154108	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1970012	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1997681	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1999198	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35314198	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4712220	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715870	0.98[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4715871	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4715873	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715874	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6912313	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6913804	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6930272	0.80[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6936037	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6939259	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6941760	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7741855	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7754095	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9349919	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9367802	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9367803	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9367805	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9367807	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9370694	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9382890	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9396425	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs9476419	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14016400-14018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr6:14016800-14021200	Weak transcription	K562	blood
3	chr6:14017400-14020400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:14017400-14020800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr6:14017800-14020600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr6:14018000-14018800	Active TSS	ES-I3 Cell Line	embryonic stem cell
7	chr6:14018000-14018800	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr6:14018000-14018800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
9	chr6:14018000-14019200	Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr6:14018000-14020400	Weak transcription	Stomach Smooth Muscle	stomach
11	chr6:14018000-14027200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr6:14018200-14020400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:14018200-14020400	Weak transcription	Fetal Brain Male	brain
14	chr6:14018200-14020600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:14018200-14024200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr6:14018200-14025800	Weak transcription	Fetal Brain Female	brain
17	chr6:14018600-14020400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr6:14018600-14020600	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:14018600-14020600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr6:14018600-14020800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr6:14018600-14023800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
22	chr6:14018600-14024000	Weak transcription	Pancreas	Pancrea
23	chr6:14018600-14024600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links