Variant report

Variant	rs7741855
Chromosome Location	chr6:14016593-14016594
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14009591..14012613-chr6:14015214..14017538,3	K562	blood:
2	chr6:13999159..14001461-chr6:14015202..14016764,2	MCF-7	breast:
3	chr6:14012568..14015393-chr6:14015771..14017305,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016111	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10456193	0.81[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10949196	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12154001	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs12154004	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154107	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154108	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1970012	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997681	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1999198	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35314198	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712220	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715870	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715871	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715872	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715873	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715874	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6912313	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913804	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930272	0.94[ASN][1000 genomes]
rs6936037	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939259	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941760	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7754095	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349919	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367802	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9367803	0.94[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9367805	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367807	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9370694	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382890	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396425	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476419	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14013200-14017000	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr6:14014200-14016800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr6:14015600-14017400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:14015800-14017800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr6:14016200-14018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr6:14016200-14018200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr6:14016400-14016600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
8	chr6:14016400-14016800	Enhancers	K562	blood
9	chr6:14016400-14017000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
10	chr6:14016400-14017000	Enhancers	Pancreas	Pancrea
11	chr6:14016400-14017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
12	chr6:14016400-14017400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr6:14016400-14017600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
14	chr6:14016400-14017800	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr6:14016400-14018000	Enhancers	Stomach Smooth Muscle	stomach
16	chr6:14016400-14018400	Enhancers	Cortex derived primary cultured neurospheres	brain
17	chr6:14016400-14018600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr6:14016400-14018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links