Variant report

Variant	rs1999198
Chromosome Location	chr6:14017198-14017199
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:14009591..14012613-chr6:14015214..14017538,3	K562	blood:
2	chr6:14012568..14015393-chr6:14015771..14017305,2	K562	blood:
3	chr6:14016910..14018943-chr6:14020020..14021629,2	K562	blood:

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs1016111	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10456193	0.83[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs10949196	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12154001	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12154004	0.94[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154107	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12154108	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1970012	0.88[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1997681	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs35314198	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4712220	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715870	0.96[AFR][1000 genomes];0.87[AMR][1000 genomes];0.86[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4715871	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4715872	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4715873	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4715874	0.95[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6912313	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6913804	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6930272	0.80[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6936037	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs6939259	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6941760	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7741855	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7754095	0.94[AFR][1000 genomes];0.99[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9349919	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9367802	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9367803	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9367805	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9367807	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs9370694	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9382890	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9396425	0.91[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9476419	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:14015600-14017400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr6:14015800-14017800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr6:14016200-14018000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr6:14016200-14018200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:14016400-14017200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr6:14016400-14017400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr6:14016400-14017600	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
8	chr6:14016400-14017800	Enhancers	HUES6 Cell Line	embryonic stem cell
9	chr6:14016400-14018000	Enhancers	Stomach Smooth Muscle	stomach
10	chr6:14016400-14018400	Enhancers	Cortex derived primary cultured neurospheres	brain
11	chr6:14016400-14018600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr6:14016400-14018800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
13	chr6:14016600-14017600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr6:14016600-14017600	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
15	chr6:14016600-14017800	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
16	chr6:14016600-14018000	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr6:14016600-14018000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
18	chr6:14016600-14018200	Enhancers	HUES64 Cell Line	embryonic stem cell
19	chr6:14016600-14018200	Enhancers	Fetal Lung	lung
20	chr6:14016800-14017200	Enhancers	iPS-18 Cell Line	embryonic stem cell
21	chr6:14016800-14017200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr6:14016800-14017400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr6:14016800-14018000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
24	chr6:14016800-14018200	Enhancers	Fetal Brain Female	brain
25	chr6:14016800-14021200	Weak transcription	K562	blood
26	chr6:14017000-14017400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr6:14017000-14017800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
28	chr6:14017000-14018000	Enhancers	H9 Cell Line	embryonic stem cell
29	chr6:14017000-14018000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr6:14017000-14018000	Weak transcription	Pancreas	Pancrea
31	chr6:14017000-14018200	Enhancers	Fetal Brain Male	brain

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