Variant report

Variant	rs10463381
Chromosome Location	chr5:145425928-145425929
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOXA1	chr5:145425728-145425966	T-47D	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr5:145419348..145421687-chr5:145425809..145428439,2	MCF-7	breast:
2	chr5:145425852..145428406-chr5:145465535..145467053,2	K562	blood:
3	chr5:145360817..145362875-chr5:145425085..145428681,3	MCF-7	breast:

Variant related genes	Relation type
SH3RF2	TF binding region

Extended variants
information (count: 153 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:153)

rs_ID	r²[population]
rs10463379	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10463382	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1056149	0.81[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11167925	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11167926	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11167927	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11167928	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11167929	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1158395	0.81[ASN][1000 genomes]
rs1160791	0.81[ASN][1000 genomes]
rs11738320	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11738329	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11739231	0.86[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11739577	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11740034	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11740294	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11740577	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11740646	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11741665	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11741958	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11742574	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11742599	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11742606	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743632	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11743638	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11744031	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11744037	0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11746712	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11746953	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11747075	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11747459	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11748213	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11748238	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11749557	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11749886	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11750281	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11949400	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11950760	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12187381	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12188401	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12522478	0.81[ASN][1000 genomes]
rs12652801	0.81[ASN][1000 genomes]
rs13157647	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13159280	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13163457	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13163787	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13170195	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13171465	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13181933	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs13182298	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1558147	0.81[ASN][1000 genomes]
rs166047	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs168711	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs168712	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17212260	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17212359	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs173587	0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17426347	0.81[ASN][1000 genomes]
rs17426499	0.81[ASN][1000 genomes]
rs17426578	0.81[ASN][1000 genomes]
rs17492228	0.81[ASN][1000 genomes]
rs17796750	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17796792	0.95[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs185089	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1859894	0.81[ASN][1000 genomes]
rs1859895	0.93[AFR][1000 genomes];0.85[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs187465	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs187466	0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2024059	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2024060	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2024061	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2024062	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2079533	0.81[ASN][1000 genomes]
rs2079534	0.81[ASN][1000 genomes]
rs2097969	0.81[ASN][1000 genomes]
rs2190796	0.80[ASN][1000 genomes]
rs2215009	0.81[ASN][1000 genomes]
rs2215010	0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2400207	0.81[ASN][1000 genomes]
rs248771	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs248772	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248773	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248774	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248775	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248776	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248777	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248778	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs248779	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs248780	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs248781	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs248783	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs248784	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs248785	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2895646	0.81[ASN][1000 genomes]
rs2906817	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2906819	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2906820	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2962518	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2962519	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2962520	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2962522	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs35821941	0.90[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3733937	0.91[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4141240	0.81[ASN][1000 genomes]
rs4266461	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4502881	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4526155	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4571521	0.81[ASN][1000 genomes]
rs4912703	0.81[ASN][1000 genomes]
rs4913060	0.81[ASN][1000 genomes]
rs62392691	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580402	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6580403	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580404	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6580406	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6858982	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6864121	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6869873	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6871772	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6872997	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6876287	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6876582	0.81[ASN][1000 genomes]
rs6877694	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6879988	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6882211	0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6889715	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6890967	0.89[ASN][1000 genomes]
rs6891636	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6891869	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6893852	0.81[ASN][1000 genomes]
rs6894532	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6895584	0.83[AFR][1000 genomes];0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6896268	0.85[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6897800	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6898375	0.81[ASN][1000 genomes]
rs6898385	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs6898427	0.93[AFR][1000 genomes];0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs740368	0.81[ASN][1000 genomes]
rs7444347	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs758037	0.81[ASN][1000 genomes]
rs758038	0.81[ASN][1000 genomes]
rs7703851	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7706656	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7713773	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7715679	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7715846	0.81[ASN][1000 genomes]
rs7716076	0.85[ASN][1000 genomes]
rs7730462	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7733648	0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9325000	0.81[ASN][1000 genomes]
rs9325002	0.86[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs977204	0.81[ASN][1000 genomes]
rs977205	0.81[ASN][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs10463381	LARS	cis	Thyroid	GTEx

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:145373400-145428400	Weak transcription	Fetal Stomach	stomach
2	chr5:145412600-145453200	Weak transcription	Pancreas	Pancrea
3	chr5:145414000-145435200	Weak transcription	Aorta	Aorta
4	chr5:145421000-145426000	Weak transcription	Skeletal Muscle Female	skeletal muscle
5	chr5:145422200-145427200	Weak transcription	Gastric	stomach
6	chr5:145422600-145427000	Weak transcription	Left Ventricle	heart
7	chr5:145422800-145427000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
8	chr5:145422800-145431600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr5:145422800-145441800	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr5:145423000-145426200	Weak transcription	Duodenum Mucosa	Duodenum
11	chr5:145423000-145426200	Weak transcription	Fetal Intestine Small	intestine
12	chr5:145423000-145426400	Weak transcription	Colonic Mucosa	Colon
13	chr5:145423000-145426800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
14	chr5:145423000-145426800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
15	chr5:145423000-145427000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr5:145423000-145427000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr5:145423000-145427000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr5:145423000-145427000	Weak transcription	Esophagus	oesophagus
19	chr5:145423000-145427000	Weak transcription	Fetal Intestine Large	intestine
20	chr5:145423000-145427200	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr5:145423000-145431000	Weak transcription	Osteobl	bone
22	chr5:145423400-145427000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr5:145423400-145427000	Weak transcription	Hela-S3	cervix
24	chr5:145423600-145426400	Weak transcription	Stomach Mucosa	stomach
25	chr5:145423800-145426000	Weak transcription	HMEC	breast
26	chr5:145424200-145426200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr5:145424400-145426600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr5:145425400-145428800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr5:145425600-145426400	Genic enhancers	Rectal Mucosa Donor 31	rectum
30	chr5:145425600-145428800	Genic enhancers	NHEK	skin
31	chr5:145425800-145426400	Enhancers	Small Intestine	intestine
32	chr5:145425800-145427600	Enhancers	Rectal Mucosa Donor 29	rectum

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