The 2.0 version of rSNPBase

Variant report

Variant rs187466
Chromosome Location chr5:145429341-145429342
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:43 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145412600-145453200 Weak transcription Pancreas Pancrea
2 chr5:145414000-145435200 Weak transcription Aorta Aorta
3 chr5:145422800-145431600 Weak transcription ES-I3 Cell Line embryonic stem cell
4 chr5:145422800-145441800 Weak transcription Placenta Amnion Placenta Amnion
5 chr5:145423000-145431000 Weak transcription Osteobl bone
6 chr5:145426000-145431000 Weak transcription HSMM muscle
7 chr5:145426400-145435200 Weak transcription Small Intestine intestine
8 chr5:145427200-145430000 Strong transcription Fetal Intestine Large intestine
9 chr5:145427200-145442000 Weak transcription Skeletal Muscle Male skeletal muscle
10 chr5:145427400-145429600 Strong transcription Gastric stomach
11 chr5:145427400-145438800 Weak transcription Right Ventricle heart
12 chr5:145427600-145431200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
13 chr5:145427600-145432600 Weak transcription Liver Liver
14 chr5:145427600-145435600 Weak transcription Esophagus oesophagus
15 chr5:145427600-145437800 Weak transcription Left Ventricle heart
16 chr5:145427600-145438600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
17 chr5:145428200-145430000 Strong transcription HepG2 liver
18 chr5:145428200-145431000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
19 chr5:145428200-145438000 Weak transcription Rectal Smooth Muscle rectum
20 chr5:145428200-145448200 Strong transcription Breast Myoepithelial Primary Cells Breast
21 chr5:145428400-145429400 Weak transcription Rectal Mucosa Donor 29 rectum
22 chr5:145428400-145429800 Strong transcription Fetal Stomach stomach
23 chr5:145428600-145429600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
24 chr5:145428600-145429800 Genic enhancers H1 Derived Mesenchymal Stem Cells ES cell derived
25 chr5:145428800-145429400 Weak transcription Sigmoid Colon Sigmoid Colon
26 chr5:145428800-145429600 Enhancers Fetal Heart heart
27 chr5:145428800-145432400 Weak transcription Colonic Mucosa Colon
28 chr5:145428800-145444200 Strong transcription NHEK skin
29 chr5:145428800-145448600 Strong transcription Duodenum Mucosa Duodenum
30 chr5:145428800-145450000 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
31 chr5:145429000-145429800 Strong transcription Fetal Intestine Small intestine
32 chr5:145429000-145433000 Weak transcription Skeletal Muscle Female skeletal muscle
33 chr5:145429000-145438800 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
34 chr5:145429000-145439000 Strong transcription HMEC breast
35 chr5:145429000-145446800 Strong transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
36 chr5:145429000-145447400 Strong transcription Rectal Mucosa Donor 31 rectum
37 chr5:145429000-145448800 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
38 chr5:145429200-145429400 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
39 chr5:145429200-145429400 Enhancers Adipose Nuclei Adipose
40 chr5:145429200-145429600 Enhancers Brain Angular Gyrus brain
41 chr5:145429200-145429600 Genic enhancers Stomach Mucosa stomach
42 chr5:145429200-145431000 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
43 chr5:145429200-145445000 Weak transcription Hela-S3 cervix

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Last update: Aug 31, 2015