The 2.0 version of rSNPBase

Variant report

Variant rs977205
Chromosome Location chr5:145371780-145371781
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:28 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr5:145362200-145399200 Weak transcription Placenta Amnion Placenta Amnion
2 chr5:145362400-145372600 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
3 chr5:145362400-145372600 Strong transcription Foreskin Keratinocyte Primary Cells skin02 Skin
4 chr5:145362600-145404400 Weak transcription Skeletal Muscle Male skeletal muscle
5 chr5:145363400-145372600 Weak transcription Esophagus oesophagus
6 chr5:145363400-145372800 Weak transcription Left Ventricle heart
7 chr5:145364400-145385800 Weak transcription Pancreas Pancrea
8 chr5:145366000-145371800 Enhancers Fetal Intestine Large intestine
9 chr5:145366200-145371800 Enhancers Fetal Intestine Small intestine
10 chr5:145366200-145372800 Weak transcription Fetal Stomach stomach
11 chr5:145367400-145372000 Enhancers Rectal Mucosa Donor 31 rectum
12 chr5:145367400-145372600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
13 chr5:145368400-145386600 Weak transcription HepG2 liver
14 chr5:145369400-145393400 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr5:145369600-145393400 Weak transcription NH-A brain
16 chr5:145370000-145375600 Weak transcription Liver Liver
17 chr5:145370000-145392800 Weak transcription Colonic Mucosa Colon
18 chr5:145370200-145372600 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr5:145370800-145375600 Weak transcription NHEK skin
20 chr5:145370800-145386400 Weak transcription Gastric stomach
21 chr5:145371000-145372600 Weak transcription HMEC breast
22 chr5:145371000-145380800 Weak transcription Stomach Mucosa stomach
23 chr5:145371000-145384800 Weak transcription Osteobl bone
24 chr5:145371200-145372600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
25 chr5:145371200-145372800 Weak transcription Breast Myoepithelial Primary Cells Breast
26 chr5:145371400-145372600 Weak transcription Rectal Mucosa Donor 29 rectum
27 chr5:145371400-145373600 ZNF genes & repeats Foreskin Keratinocyte Primary Cells skin03 Skin
28 chr5:145371600-145372600 Weak transcription Duodenum Mucosa Duodenum

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Last update: Aug 31, 2015