Variant report
| Variant | rs10483404 |
|---|---|
| Chromosome Location | chr14:32748058-32748059 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:21)
| rs_ID | r2[population] |
|---|---|
| rs12586994 | 0.97[ASN][1000 genomes] |
| rs12590485 | 0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes] |
| rs17098631 | 0.94[CHB][hapmap];0.83[CHD][hapmap];0.90[JPT][hapmap];0.85[ASN][1000 genomes] |
| rs17098636 | 0.93[ASN][1000 genomes] |
| rs17098637 | 0.82[CHB][hapmap];0.97[CHD][hapmap];0.90[JPT][hapmap];0.93[ASN][1000 genomes] |
| rs17098675 | 0.93[ASN][1000 genomes] |
| rs1885719 | 0.87[ASN][1000 genomes] |
| rs1951679 | 0.86[ASN][1000 genomes] |
| rs28583364 | 0.89[ASN][1000 genomes] |
| rs60778747 | 0.87[ASN][1000 genomes] |
| rs6571501 | 0.82[CHB][hapmap];0.97[CHD][hapmap];0.88[ASN][1000 genomes] |
| rs7142879 | 0.84[ASN][1000 genomes] |
| rs7146618 | 0.95[ASN][1000 genomes] |
| rs7149287 | 0.87[ASN][1000 genomes] |
| rs7150633 | 0.85[ASN][1000 genomes] |
| rs7161530 | 0.93[CHB][hapmap];0.83[JPT][hapmap] |
| rs74043711 | 0.91[ASN][1000 genomes] |
| rs74043719 | 0.90[ASN][1000 genomes] |
| rs8007042 | 0.81[ASN][1000 genomes] |
| rs9788513 | 0.98[ASN][1000 genomes] |
| rs9788603 | 0.98[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv3527777 | chr14:32669175-32761850 | Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| 2 | esv3527778 | chr14:32669175-32761850 | Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr14:32742800-32752800 | Weak transcription | H1 BMP4 Derived Trophoblast Cultured Cells | ES cell derived |
