Variant report

Variant	rs7146618
Chromosome Location	chr14:32731265-32731266
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32730953..32733918-chr14:32882288..32884788,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10483404	0.95[ASN][1000 genomes]
rs12586994	0.93[ASN][1000 genomes]
rs12590485	0.85[ASN][1000 genomes]
rs17098631	0.83[CHB][hapmap];0.85[JPT][hapmap];0.84[ASN][1000 genomes]
rs17098636	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17098637	1.00[CEU][hapmap];0.94[CHB][hapmap];0.95[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17098675	0.89[ASN][1000 genomes]
rs1885719	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1951679	0.87[ASN][1000 genomes]
rs28583364	0.86[ASN][1000 genomes]
rs60778747	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6571501	1.00[CEU][hapmap];0.94[CHB][hapmap];0.80[JPT][hapmap];0.81[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7142879	0.89[ASN][1000 genomes]
rs7149287	0.84[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7150633	0.86[AFR][1000 genomes];0.88[AMR][1000 genomes];0.83[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7161530	0.82[CHB][hapmap]
rs74043711	0.95[ASN][1000 genomes]
rs74043719	0.85[ASN][1000 genomes]
rs8007042	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs9788513	0.95[ASN][1000 genomes]
rs9788603	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
2	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
3	chr14:32724600-32732400	Weak transcription	Pancreas	Pancrea
4	chr14:32725200-32732400	Weak transcription	Brain Angular Gyrus	brain
5	chr14:32726000-32732000	Weak transcription	Brain Cingulate Gyrus	brain
6	chr14:32726000-32732200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:32728200-32732200	Weak transcription	Ovary	ovary
8	chr14:32728200-32732600	Weak transcription	Duodenum Smooth Muscle	Duodenum
9	chr14:32728200-32732800	Weak transcription	Duodenum Mucosa	Duodenum
10	chr14:32728200-32742400	Weak transcription	Right Ventricle	heart
11	chr14:32728400-32732000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:32728400-32732200	Weak transcription	Skeletal Muscle Female	skeletal muscle
13	chr14:32728400-32732400	Weak transcription	Brain Substantia Nigra	brain
14	chr14:32728800-32732400	Weak transcription	Fetal Lung	lung
15	chr14:32729000-32732200	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr14:32729400-32732200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
17	chr14:32729600-32732200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr14:32729600-32732200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:32729600-32732800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr14:32729600-32733200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr14:32729600-32739000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:32730400-32732000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
23	chr14:32731000-32732200	Weak transcription	Dnd41	blood

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