Variant report

Variant	rs1951679
Chromosome Location	chr14:32723703-32723704
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:32723026..32725175-chr14:32851275..32852681,8	MCF-7	breast:
2	chr14:32413109..32414791-chr14:32721834..32724143,2	MCF-7	breast:
3	chr14:32542464..32543042-chr14:32723232..32724070,2	K562	blood:
4	chr14:32542263..32548476-chr14:32718858..32724854,7	MCF-7	breast:
5	chr14:32404299..32405896-chr14:32722271..32724714,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000258655	Chromatin interaction
ENSG00000100852	Chromatin interaction
ENSG00000258474	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10483404	0.86[ASN][1000 genomes]
rs12586994	0.83[ASN][1000 genomes]
rs17098631	0.95[ASN][1000 genomes]
rs17098636	0.88[ASN][1000 genomes]
rs17098637	0.88[ASN][1000 genomes]
rs17098675	0.81[ASN][1000 genomes]
rs6571501	0.83[ASN][1000 genomes]
rs7142879	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7146618	0.87[ASN][1000 genomes]
rs7149287	0.95[ASN][1000 genomes]
rs7150633	0.93[ASN][1000 genomes]
rs7161530	0.81[ASN][1000 genomes]
rs74043711	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9788513	0.88[ASN][1000 genomes]
rs9788603	0.88[ASN][1000 genomes]
rs9972142	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32715200-32727600	Weak transcription	Psoas Muscle	Psoas
2	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
3	chr14:32719400-32727800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:32719600-32724200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:32719600-32727800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr14:32721200-32724200	Weak transcription	Right Atrium	heart
7	chr14:32721200-32727600	Weak transcription	Cortex derived primary cultured neurospheres	brain
8	chr14:32721400-32724000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr14:32721400-32724000	Weak transcription	Brain Anterior Caudate	brain
10	chr14:32721400-32724000	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr14:32721400-32724000	Weak transcription	HepG2	liver
12	chr14:32721400-32724200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr14:32721400-32724200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr14:32721400-32724200	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr14:32721400-32724200	Weak transcription	Fetal Lung	lung
16	chr14:32721400-32724600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr14:32721400-32728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
18	chr14:32721400-32728800	Weak transcription	Rectal Mucosa Donor 31	rectum
19	chr14:32721400-32729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
21	chr14:32721600-32723800	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:32721600-32723800	Weak transcription	Colon Smooth Muscle	Colon
23	chr14:32721600-32723800	Weak transcription	Pancreas	Pancrea
24	chr14:32721600-32724000	Weak transcription	Fetal Stomach	stomach
25	chr14:32721600-32724400	Weak transcription	Brain Hippocampus Middle	brain
26	chr14:32721600-32724400	Weak transcription	A549	lung
27	chr14:32721600-32727800	Weak transcription	NHEK	skin
28	chr14:32721800-32723800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:32721800-32724000	Weak transcription	Brain Substantia Nigra	brain
30	chr14:32721800-32724200	Weak transcription	Brain Angular Gyrus	brain
31	chr14:32721800-32724200	Weak transcription	Skeletal Muscle Male	skeletal muscle
32	chr14:32721800-32724200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr14:32721800-32724400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:32721800-32726800	Weak transcription	Dnd41	blood
35	chr14:32721800-32728200	Weak transcription	HMEC	breast
36	chr14:32722000-32724000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
37	chr14:32722000-32724200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
38	chr14:32723400-32725200	Enhancers	Stomach Smooth Muscle	stomach
39	chr14:32723600-32726000	Enhancers	Rectal Smooth Muscle	rectum

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