Variant report

Variant	rs7142879
Chromosome Location	chr14:32725349-32725350
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32720658..32723115-chr14:32723813..32725711,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10483404	0.84[ASN][1000 genomes]
rs12586994	0.82[ASN][1000 genomes]
rs17098631	0.81[CHB][hapmap];0.91[CHD][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs17098636	0.90[ASN][1000 genomes]
rs17098637	0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[JPT][hapmap];0.90[ASN][1000 genomes]
rs1951679	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6571501	0.82[CHB][hapmap];0.84[CHD][hapmap];0.85[ASN][1000 genomes]
rs7146618	0.89[ASN][1000 genomes]
rs7149287	0.97[ASN][1000 genomes]
rs7150633	0.95[ASN][1000 genomes]
rs7161530	0.80[CHB][hapmap];0.89[JPT][hapmap]
rs74043711	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs8012469	0.83[AFR][1000 genomes]
rs9788513	0.86[ASN][1000 genomes]
rs9788603	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32715200-32727600	Weak transcription	Psoas Muscle	Psoas
2	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
3	chr14:32719400-32727800	Weak transcription	Duodenum Mucosa	Duodenum
4	chr14:32719600-32727800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr14:32721200-32727600	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr14:32721400-32728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr14:32721400-32728800	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr14:32721400-32729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
9	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
10	chr14:32721600-32727800	Weak transcription	NHEK	skin
11	chr14:32721800-32726800	Weak transcription	Dnd41	blood
12	chr14:32721800-32728200	Weak transcription	HMEC	breast
13	chr14:32723600-32726000	Enhancers	Rectal Smooth Muscle	rectum
14	chr14:32723800-32725800	Enhancers	Colon Smooth Muscle	Colon
15	chr14:32723800-32726000	Enhancers	Brain Cingulate Gyrus	brain
16	chr14:32724000-32726200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr14:32724000-32726600	Enhancers	Fetal Muscle Leg	muscle
18	chr14:32724200-32725400	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr14:32724200-32725400	Enhancers	Right Atrium	heart
20	chr14:32724200-32725400	Enhancers	Skeletal Muscle Male	skeletal muscle
21	chr14:32724200-32726000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr14:32724200-32727600	Weak transcription	Fetal Kidney	kidney
23	chr14:32724400-32726000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr14:32724400-32726000	Enhancers	Brain Hippocampus Middle	brain
25	chr14:32724400-32727600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr14:32724600-32725400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr14:32724600-32727600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
28	chr14:32724600-32727600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr14:32724600-32727600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
30	chr14:32724600-32727600	Weak transcription	Fetal Intestine Small	intestine
31	chr14:32724600-32727600	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr14:32724600-32727800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr14:32724600-32728000	Weak transcription	Fetal Intestine Large	intestine
34	chr14:32724600-32728000	Weak transcription	Hela-S3	cervix
35	chr14:32724600-32732400	Weak transcription	Pancreas	Pancrea
36	chr14:32724800-32725800	Weak transcription	A549	lung
37	chr14:32724800-32726200	Weak transcription	Fetal Muscle Trunk	muscle
38	chr14:32724800-32726400	Weak transcription	HepG2	liver
39	chr14:32724800-32727600	Weak transcription	Fetal Lung	lung
40	chr14:32724800-32727600	Weak transcription	Fetal Stomach	stomach
41	chr14:32724800-32727800	Weak transcription	Duodenum Smooth Muscle	Duodenum
42	chr14:32724800-32728000	Weak transcription	HUES6 Cell Line	embryonic stem cell
43	chr14:32724800-32728000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
44	chr14:32724800-32728200	Weak transcription	HUES64 Cell Line	embryonic stem cell
45	chr14:32724800-32728400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
46	chr14:32724800-32728800	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr14:32724800-32729000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr14:32725000-32727800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr14:32725000-32727800	Weak transcription	Brain Substantia Nigra	brain
50	chr14:32725200-32727200	Weak transcription	Stomach Smooth Muscle	stomach

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