Variant report

Variant	rs17098636
Chromosome Location	chr14:32728823-32728824
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32544361..32548285-chr14:32726893..32730492,3	MCF-7	breast:
2	chr14:32727633..32729387-chr14:32733655..32736313,2	K562	blood:

Variant related genes	Relation type
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10483404	0.93[ASN][1000 genomes]
rs12586994	0.90[ASN][1000 genomes]
rs12590485	0.84[ASN][1000 genomes]
rs17098631	0.84[ASN][1000 genomes]
rs17098637	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17098675	0.88[ASN][1000 genomes]
rs1885719	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs1951679	0.88[ASN][1000 genomes]
rs28583364	0.85[ASN][1000 genomes]
rs60778747	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6571501	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7142879	0.90[ASN][1000 genomes]
rs7146618	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7149287	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7150633	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs74043711	0.94[ASN][1000 genomes]
rs74043719	0.84[ASN][1000 genomes]
rs8007042	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs9788513	0.94[ASN][1000 genomes]
rs9788603	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:71 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
2	chr14:32721400-32729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
4	chr14:32724600-32732400	Weak transcription	Pancreas	Pancrea
5	chr14:32724800-32729000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr14:32725200-32732400	Weak transcription	Brain Angular Gyrus	brain
7	chr14:32726000-32732000	Weak transcription	Brain Cingulate Gyrus	brain
8	chr14:32726000-32732200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
9	chr14:32726400-32729600	Enhancers	HepG2	liver
10	chr14:32726800-32729200	Enhancers	Rectal Smooth Muscle	rectum
11	chr14:32727400-32729200	Enhancers	Fetal Muscle Leg	muscle
12	chr14:32727400-32729600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr14:32727600-32729000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:32727600-32729000	Enhancers	Colon Smooth Muscle	Colon
15	chr14:32727600-32729000	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr14:32727600-32729200	Enhancers	Fetal Stomach	stomach
17	chr14:32727600-32729200	Enhancers	Fetal Thymus	thymus
18	chr14:32727600-32729400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr14:32727600-32729400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr14:32727600-32729400	Enhancers	Fetal Intestine Small	intestine
21	chr14:32727600-32729400	Enhancers	Placenta Amnion	Placenta Amnion
22	chr14:32727600-32729600	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
26	chr14:32727600-32729600	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr14:32727600-32729600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr14:32727600-32729600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr14:32727800-32729000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr14:32727800-32729400	Enhancers	HSMMtube	muscle
31	chr14:32727800-32729600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr14:32727800-32729600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr14:32727800-32729600	Enhancers	K562	blood
34	chr14:32727800-32729600	Enhancers	NHEK	skin
35	chr14:32728000-32729000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
36	chr14:32728000-32729400	Enhancers	HUES6 Cell Line	embryonic stem cell
37	chr14:32728000-32729400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
38	chr14:32728000-32729400	Enhancers	A549	lung
39	chr14:32728000-32729400	Enhancers	HUVEC	blood vessel
40	chr14:32728000-32729600	Enhancers	Fetal Intestine Large	intestine
41	chr14:32728000-32729600	Enhancers	Pancreatic Islets	Pancreatic Islet
42	chr14:32728000-32729600	Enhancers	Hela-S3	cervix
43	chr14:32728200-32729000	Weak transcription	Psoas Muscle	Psoas
44	chr14:32728200-32729200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr14:32728200-32729200	Weak transcription	Small Intestine	intestine
46	chr14:32728200-32729400	Enhancers	HUES64 Cell Line	embryonic stem cell
47	chr14:32728200-32729600	Flanking Active TSS	GM12878-XiMat	blood
48	chr14:32728200-32729600	Enhancers	HMEC	breast
49	chr14:32728200-32729600	Enhancers	NH-A	brain
50	chr14:32728200-32732200	Weak transcription	Ovary	ovary

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