Variant report

Variant	rs6571501
Chromosome Location	chr14:32728233-32728234
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:32544361..32548285-chr14:32726893..32730492,3	MCF-7	breast:
2	chr14:32727633..32729387-chr14:32733655..32736313,2	K562	blood:

Variant related genes	Relation type
ENSG00000100852	Chromatin interaction
ENSG00000258655	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10483404	0.88[ASN][1000 genomes]
rs12586994	0.85[ASN][1000 genomes]
rs12590485	0.87[ASN][1000 genomes]
rs17098631	0.81[CHD][hapmap]
rs17098636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17098637	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.85[JPT][hapmap];1.00[LWK][hapmap];0.93[MEX][hapmap];0.96[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs17098675	0.83[ASN][1000 genomes]
rs1885719	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs1951679	0.83[ASN][1000 genomes]
rs28583364	0.88[ASN][1000 genomes]
rs60778747	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7142879	0.85[ASN][1000 genomes]
rs7146618	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7149287	0.91[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7150633	0.93[AFR][1000 genomes];0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs74043711	0.97[ASN][1000 genomes]
rs74043719	0.87[ASN][1000 genomes]
rs8007042	0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9788513	0.90[ASN][1000 genomes]
rs9788603	0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3527777	chr14:32669175-32761850	Flanking Active TSS Enhancers Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	esv3527778	chr14:32669175-32761850	Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS Weak transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv564184	chr14:32688214-32734691	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:65 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:32719000-32737600	Weak transcription	Left Ventricle	heart
2	chr14:32721400-32728800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:32721400-32728800	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr14:32721400-32729200	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr14:32721400-32733000	Weak transcription	Fetal Heart	heart
6	chr14:32724600-32732400	Weak transcription	Pancreas	Pancrea
7	chr14:32724800-32728400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr14:32724800-32728800	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr14:32724800-32729000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
10	chr14:32725200-32732400	Weak transcription	Brain Angular Gyrus	brain
11	chr14:32726000-32732000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:32726000-32732200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr14:32726400-32729600	Enhancers	HepG2	liver
14	chr14:32726800-32728800	Enhancers	Dnd41	blood
15	chr14:32726800-32729200	Enhancers	Rectal Smooth Muscle	rectum
16	chr14:32727400-32729200	Enhancers	Fetal Muscle Leg	muscle
17	chr14:32727400-32729600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr14:32727600-32728400	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr14:32727600-32728600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr14:32727600-32728800	Enhancers	Fetal Lung	lung
21	chr14:32727600-32729000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr14:32727600-32729000	Enhancers	Colon Smooth Muscle	Colon
23	chr14:32727600-32729000	Enhancers	Skeletal Muscle Male	skeletal muscle
24	chr14:32727600-32729200	Enhancers	Fetal Stomach	stomach
25	chr14:32727600-32729200	Enhancers	Fetal Thymus	thymus
26	chr14:32727600-32729400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
27	chr14:32727600-32729400	Enhancers	Breast Myoepithelial Primary Cells	Breast
28	chr14:32727600-32729400	Enhancers	Fetal Intestine Small	intestine
29	chr14:32727600-32729400	Enhancers	Placenta Amnion	Placenta Amnion
30	chr14:32727600-32729600	Enhancers	ES-I3 Cell Line	embryonic stem cell
31	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells short term culture	blood
32	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
33	chr14:32727600-32729600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
34	chr14:32727600-32729600	Enhancers	Cortex derived primary cultured neurospheres	brain
35	chr14:32727600-32729600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr14:32727600-32729600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr14:32727800-32728400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr14:32727800-32728400	Weak transcription	Primary hematopoietic stem cells	blood
39	chr14:32727800-32728400	Enhancers	Brain Substantia Nigra	brain
40	chr14:32727800-32729000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
41	chr14:32727800-32729400	Enhancers	HSMMtube	muscle
42	chr14:32727800-32729600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
43	chr14:32727800-32729600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
44	chr14:32727800-32729600	Enhancers	K562	blood
45	chr14:32727800-32729600	Enhancers	NHEK	skin
46	chr14:32728000-32729000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
47	chr14:32728000-32729400	Enhancers	HUES6 Cell Line	embryonic stem cell
48	chr14:32728000-32729400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
49	chr14:32728000-32729400	Enhancers	A549	lung
50	chr14:32728000-32729400	Enhancers	HUVEC	blood vessel

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