Variant report

Variant	rs10484809
Chromosome Location	chr6:110642754-110642755
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs12662099	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12662559	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12662669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664697	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12665178	0.82[CHB][hapmap]
rs2361500	0.81[CHD][hapmap]
rs2878176	0.81[ASN][1000 genomes]
rs56798260	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59738433	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61704264	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62435910	0.94[ASN][1000 genomes]
rs6915019	0.95[ASN][1000 genomes]
rs6915870	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918158	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs6927464	0.90[CHD][hapmap]
rs6935544	0.81[CHD][hapmap]
rs7749049	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761025	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774094	0.80[ASN][1000 genomes]
rs9481058	0.95[ASN][1000 genomes]
rs9487324	0.86[CHB][hapmap];1.00[CHD][hapmap]
rs9487380	0.95[ASN][1000 genomes]
rs9688851	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110628200-110651200	Weak transcription	Gastric	stomach
2	chr6:110631800-110643400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:110632400-110646200	Weak transcription	Pancreas	Pancrea
4	chr6:110632800-110642800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr6:110637200-110644200	Weak transcription	Ovary	ovary
6	chr6:110637400-110645000	Weak transcription	Sigmoid Colon	Sigmoid Colon
7	chr6:110637400-110645400	Weak transcription	Right Atrium	heart
8	chr6:110637400-110646200	Weak transcription	Aorta	Aorta
9	chr6:110638000-110643200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:110638800-110646600	Weak transcription	Brain Angular Gyrus	brain
11	chr6:110639400-110643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:110639400-110643000	Weak transcription	HUES6 Cell Line	embryonic stem cell
13	chr6:110639400-110643000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr6:110639400-110644000	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr6:110639400-110644000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr6:110639600-110643600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr6:110640200-110647200	Enhancers	Fetal Brain Male	brain
18	chr6:110640200-110650800	Enhancers	Fetal Lung	lung
19	chr6:110640800-110646400	Weak transcription	Brain Substantia Nigra	brain
20	chr6:110641000-110643000	Weak transcription	Brain Anterior Caudate	brain
21	chr6:110641000-110644400	Enhancers	Stomach Smooth Muscle	stomach
22	chr6:110641000-110650800	Enhancers	Fetal Stomach	stomach
23	chr6:110641200-110642800	Weak transcription	Colon Smooth Muscle	Colon
24	chr6:110641200-110644200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr6:110641200-110645400	Weak transcription	Lung	lung
26	chr6:110641400-110650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
27	chr6:110642000-110643200	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr6:110642600-110643200	Enhancers	Fetal Kidney	kidney
29	chr6:110642600-110644600	Enhancers	Fetal Brain Female	brain
30	chr6:110642600-110648200	Enhancers	Duodenum Smooth Muscle	Duodenum

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