Variant report

Variant	rs62435910
Chromosome Location	chr6:110652132-110652133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484809	0.94[ASN][1000 genomes]
rs12662669	0.91[ASN][1000 genomes]
rs56798260	0.91[ASN][1000 genomes]
rs59738433	0.97[ASN][1000 genomes]
rs61704264	0.83[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs6915019	0.98[ASN][1000 genomes]
rs6915870	0.97[ASN][1000 genomes]
rs7749049	0.91[ASN][1000 genomes]
rs7761025	0.91[ASN][1000 genomes]
rs9481058	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9487380	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9688851	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110644600-110652600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:110648400-110653400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr6:110649000-110656600	Enhancers	Fetal Brain Male	brain
4	chr6:110649200-110653600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
5	chr6:110649600-110653000	Weak transcription	Right Atrium	heart
6	chr6:110649800-110652400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
7	chr6:110650400-110652200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr6:110650800-110653800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr6:110651000-110652800	Weak transcription	Fetal Heart	heart
10	chr6:110651200-110652400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr6:110651200-110652800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr6:110651200-110653000	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr6:110651400-110652200	Flanking Active TSS	Colon Smooth Muscle	Colon
14	chr6:110651400-110652200	Enhancers	Fetal Brain Female	brain
15	chr6:110651400-110652600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:110651400-110653000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr6:110651400-110653400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr6:110651400-110653800	Enhancers	Fetal Lung	lung
19	chr6:110651400-110669400	Weak transcription	Pancreatic Islets	Pancreatic Islet
20	chr6:110651600-110652600	Weak transcription	Brain Anterior Caudate	brain
21	chr6:110651600-110652800	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:110651600-110653600	Enhancers	Ovary	ovary
23	chr6:110651600-110653800	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr6:110651600-110654200	Enhancers	Fetal Stomach	stomach
25	chr6:110651600-110654600	Enhancers	Rectal Smooth Muscle	rectum
26	chr6:110651600-110655600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
27	chr6:110651600-110661400	Weak transcription	Aorta	Aorta
28	chr6:110651600-110670200	Weak transcription	Pancreas	Pancrea
29	chr6:110651800-110652800	Weak transcription	HUES6 Cell Line	embryonic stem cell
30	chr6:110651800-110653000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr6:110651800-110653000	Weak transcription	Brain Hippocampus Middle	brain
32	chr6:110651800-110653000	Weak transcription	Fetal Kidney	kidney
33	chr6:110651800-110654200	Enhancers	HepG2	liver
34	chr6:110651800-110655600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr6:110652000-110652400	Enhancers	Stomach Smooth Muscle	stomach
36	chr6:110652000-110653000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
37	chr6:110652000-110653000	Weak transcription	Fetal Muscle Leg	muscle
38	chr6:110652000-110654400	Weak transcription	Fetal Thymus	thymus
39	chr6:110652000-110655400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain

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