Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484809	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12662099	0.86[CHB][hapmap]
rs12662559	0.86[CHB][hapmap]
rs12662669	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12664697	0.86[CHB][hapmap]
rs12665178	0.82[CHB][hapmap]
rs2878176	0.81[ASN][1000 genomes]
rs56798260	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59738433	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61704264	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62435910	0.91[ASN][1000 genomes]
rs6915019	0.92[ASN][1000 genomes]
rs6915870	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6918158	0.86[CHB][hapmap]
rs7761025	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7774094	0.80[ASN][1000 genomes]
rs9481058	0.92[ASN][1000 genomes]
rs9487324	0.86[CHB][hapmap];1.00[YRI][hapmap]
rs9487380	0.92[ASN][1000 genomes]
rs9688851	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110617000-110636800	Weak transcription	Aorta	Aorta
2	chr6:110619200-110641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr6:110620400-110640200	Weak transcription	Fetal Lung	lung
4	chr6:110620600-110641000	Weak transcription	Fetal Stomach	stomach
5	chr6:110628200-110651200	Weak transcription	Gastric	stomach
6	chr6:110629200-110638600	Weak transcription	HUES64 Cell Line	embryonic stem cell
7	chr6:110631800-110643400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr6:110632400-110646200	Weak transcription	Pancreas	Pancrea
9	chr6:110632600-110637000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr6:110632800-110642800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:110633000-110641000	Weak transcription	Lung	lung
12	chr6:110633600-110637600	Strong transcription	Stomach Smooth Muscle	stomach
13	chr6:110633800-110636600	Strong transcription	Colon Smooth Muscle	Colon
14	chr6:110634000-110642600	Weak transcription	Fetal Kidney	kidney
15	chr6:110635200-110637200	Strong transcription	Ovary	ovary

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