Variant report

Variant	rs59738433
Chromosome Location	chr6:110649258-110649259
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10484809	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12662669	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56798260	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61704264	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62435910	0.97[ASN][1000 genomes]
rs6915019	0.82[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs6915870	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7749049	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7761025	1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9481058	0.98[ASN][1000 genomes]
rs9487380	0.98[ASN][1000 genomes]
rs9688851	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110628200-110651200	Weak transcription	Gastric	stomach
2	chr6:110640200-110650800	Enhancers	Fetal Lung	lung
3	chr6:110641000-110650800	Enhancers	Fetal Stomach	stomach
4	chr6:110641400-110650800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:110642800-110650800	Enhancers	Rectal Smooth Muscle	rectum
6	chr6:110643600-110650400	Enhancers	Fetal Kidney	kidney
7	chr6:110644200-110649800	Enhancers	Ovary	ovary
8	chr6:110644400-110650400	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:110644600-110650000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr6:110644600-110652600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:110644800-110649400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
12	chr6:110645000-110650800	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr6:110645200-110650400	Weak transcription	Cortex derived primary cultured neurospheres	brain
14	chr6:110645400-110649400	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr6:110645400-110650800	Enhancers	Colon Smooth Muscle	Colon
16	chr6:110645600-110650600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:110646000-110650800	Weak transcription	Pancreatic Islets	Pancreatic Islet
18	chr6:110646200-110649600	Enhancers	Rectal Mucosa Donor 31	rectum
19	chr6:110646800-110650800	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr6:110646800-110650800	Weak transcription	Brain Substantia Nigra	brain
21	chr6:110646800-110651000	Weak transcription	Brain Cingulate Gyrus	brain
22	chr6:110647000-110649400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr6:110647000-110650800	Weak transcription	Liver	Liver
24	chr6:110647200-110649600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr6:110647200-110649600	Weak transcription	Duodenum Mucosa	Duodenum
26	chr6:110647200-110650400	Weak transcription	Adipose Nuclei	Adipose
27	chr6:110647200-110650800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
28	chr6:110647200-110650800	Weak transcription	Colonic Mucosa	Colon
29	chr6:110647200-110650800	Weak transcription	Lung	lung
30	chr6:110647600-110650200	Weak transcription	Brain Germinal Matrix	brain
31	chr6:110647800-110649400	Enhancers	Fetal Intestine Large	intestine
32	chr6:110647800-110650800	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr6:110648200-110649400	Weak transcription	Fetal Intestine Small	intestine
34	chr6:110648200-110650400	Weak transcription	Placenta	Placenta
35	chr6:110648200-110651000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
36	chr6:110648400-110649800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
37	chr6:110648400-110650400	Enhancers	Brain Anterior Caudate	brain
38	chr6:110648400-110650400	Weak transcription	Small Intestine	intestine
39	chr6:110648400-110653400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
40	chr6:110648600-110650200	Enhancers	Brain Hippocampus Middle	brain
41	chr6:110648600-110650800	Enhancers	Brain Angular Gyrus	brain
42	chr6:110648800-110649400	Enhancers	Esophagus	oesophagus
43	chr6:110648800-110650200	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr6:110649000-110649400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
45	chr6:110649000-110649600	Enhancers	Fetal Muscle Leg	muscle
46	chr6:110649000-110649600	Enhancers	Right Atrium	heart
47	chr6:110649000-110649600	Enhancers	HSMMtube	muscle
48	chr6:110649000-110649800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
49	chr6:110649000-110649800	Enhancers	Fetal Brain Female	brain
50	chr6:110649000-110650000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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