Variant report

Variant	rs9688851
Chromosome Location	chr6:110640909-110640910
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs10484809	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12662099	0.86[CHB][hapmap]
rs12662559	0.86[CHB][hapmap]
rs12662669	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12664697	0.86[CHB][hapmap]
rs12665178	0.82[CHB][hapmap]
rs2878176	0.81[ASN][1000 genomes]
rs56798260	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs59738433	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61704264	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62435910	0.94[ASN][1000 genomes]
rs6915019	0.95[ASN][1000 genomes]
rs6915870	1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6918158	0.86[CHB][hapmap]
rs7749049	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7761025	1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7774094	0.80[ASN][1000 genomes]
rs9481058	0.95[ASN][1000 genomes]
rs9487324	0.86[CHB][hapmap]
rs9487380	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110619200-110641000	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr6:110620600-110641000	Weak transcription	Fetal Stomach	stomach
3	chr6:110628200-110651200	Weak transcription	Gastric	stomach
4	chr6:110631800-110643400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr6:110632400-110646200	Weak transcription	Pancreas	Pancrea
6	chr6:110632800-110642800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr6:110633000-110641000	Weak transcription	Lung	lung
8	chr6:110634000-110642600	Weak transcription	Fetal Kidney	kidney
9	chr6:110637200-110644200	Weak transcription	Ovary	ovary
10	chr6:110637400-110645000	Weak transcription	Sigmoid Colon	Sigmoid Colon
11	chr6:110637400-110645400	Weak transcription	Right Atrium	heart
12	chr6:110637400-110646200	Weak transcription	Aorta	Aorta
13	chr6:110637600-110641000	Weak transcription	Stomach Smooth Muscle	stomach
14	chr6:110638000-110643200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr6:110638800-110646600	Weak transcription	Brain Angular Gyrus	brain
16	chr6:110639400-110643000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr6:110639400-110643000	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr6:110639400-110643000	Weak transcription	iPS-15b Cell Line	embryonic stem cell
19	chr6:110639400-110644000	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr6:110639400-110644000	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:110639600-110643600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr6:110640200-110647200	Enhancers	Fetal Brain Male	brain
23	chr6:110640200-110650800	Enhancers	Fetal Lung	lung
24	chr6:110640800-110641000	Enhancers	Brain Anterior Caudate	brain
25	chr6:110640800-110641200	Enhancers	Colon Smooth Muscle	Colon
26	chr6:110640800-110646400	Weak transcription	Brain Substantia Nigra	brain

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