Variant report

Variant	rs9487380
Chromosome Location	chr6:110651092-110651093
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10484809	0.95[ASN][1000 genomes]
rs12662099	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12662559	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12662669	0.92[ASN][1000 genomes]
rs12664697	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs12665178	0.82[CHB][hapmap]
rs2361500	0.81[CHD][hapmap]
rs56798260	0.92[ASN][1000 genomes]
rs59738433	0.98[ASN][1000 genomes]
rs61704264	0.98[ASN][1000 genomes]
rs62435910	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6915019	1.00[ASN][1000 genomes]
rs6915870	0.98[ASN][1000 genomes]
rs6918158	0.86[CHB][hapmap];0.90[CHD][hapmap]
rs6927464	0.90[CHD][hapmap]
rs6935544	0.81[CHD][hapmap]
rs7749049	0.92[ASN][1000 genomes]
rs7761025	0.92[ASN][1000 genomes]
rs9481058	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9487324	0.86[CHB][hapmap];1.00[CHD][hapmap]
rs9688851	0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948824	chr6:110443685-110889332	Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
2	nsv949643	chr6:110537685-110889332	Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
3	esv1847660	chr6:110606987-110985314	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent Enhancer Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:81 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:110628200-110651200	Weak transcription	Gastric	stomach
2	chr6:110644600-110652600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr6:110648400-110653400	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr6:110649000-110651800	Enhancers	HUES6 Cell Line	embryonic stem cell
5	chr6:110649000-110656600	Enhancers	Fetal Brain Male	brain
6	chr6:110649200-110651600	Enhancers	Stomach Mucosa	stomach
7	chr6:110649200-110653600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr6:110649400-110651800	Enhancers	ES-I3 Cell Line	embryonic stem cell
9	chr6:110649600-110651200	Weak transcription	Fetal Muscle Leg	muscle
10	chr6:110649600-110653000	Weak transcription	Right Atrium	heart
11	chr6:110649800-110652400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
12	chr6:110650000-110652000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
13	chr6:110650200-110651600	Enhancers	Brain Germinal Matrix	brain
14	chr6:110650200-110651600	Enhancers	Pancreas	Pancrea
15	chr6:110650400-110651400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr6:110650400-110652200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr6:110650600-110651200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:110650600-110651400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr6:110650600-110651400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr6:110650600-110651400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr6:110650600-110651600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr6:110650600-110652000	Flanking Active TSS	Stomach Smooth Muscle	stomach
23	chr6:110650800-110651200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr6:110650800-110651200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
25	chr6:110650800-110651200	Flanking Active TSS	Adipose Nuclei	Adipose
26	chr6:110650800-110651200	Active TSS	Brain Inferior Temporal Lobe	brain
27	chr6:110650800-110651200	Active TSS	Brain Substantia Nigra	brain
28	chr6:110650800-110651200	Active TSS	Duodenum Smooth Muscle	Duodenum
29	chr6:110650800-110651200	Flanking Active TSS	Rectal Smooth Muscle	rectum
30	chr6:110650800-110651200	Active TSS	NHDF-Ad	bronchial
31	chr6:110650800-110651200	Flanking Active TSS	Osteobl	bone
32	chr6:110650800-110651400	Enhancers	H1 Cell Line	embryonic stem cell
33	chr6:110650800-110651400	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr6:110650800-110651400	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr6:110650800-110651400	Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr6:110650800-110651400	Flanking Active TSS	Liver	Liver
37	chr6:110650800-110651400	Active TSS	Brain Angular Gyrus	brain
38	chr6:110650800-110651400	Active TSS	Brain Hippocampus Middle	brain
39	chr6:110650800-110651400	Active TSS	Colon Smooth Muscle	Colon
40	chr6:110650800-110651400	Active TSS	Esophagus	oesophagus
41	chr6:110650800-110651400	Flanking Active TSS	Fetal Kidney	kidney
42	chr6:110650800-110651400	Active TSS	Pancreatic Islets	Pancreatic Islet
43	chr6:110650800-110651400	Flanking Active TSS	Fetal Lung	lung
44	chr6:110650800-110651400	Enhancers	Fetal Muscle Trunk	muscle
45	chr6:110650800-110651400	Active TSS	Rectal Mucosa Donor 29	rectum
46	chr6:110650800-110651400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
47	chr6:110650800-110651400	Active TSS	HepG2	liver
48	chr6:110650800-110651400	Flanking Active TSS	NHLF	lung
49	chr6:110650800-110651600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
50	chr6:110650800-110651600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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