Variant report

Variant	rs10486556
Chromosome Location	chr7:27734520-27734521
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10257676	0.81[CEU][hapmap]
rs10281008	0.90[CEU][hapmap];1.00[CHD][hapmap];0.82[MEX][hapmap];0.91[TSI][hapmap];0.89[EUR][1000 genomes]
rs10486562	0.83[CHD][hapmap]
rs10951178	0.86[EUR][1000 genomes]
rs10951180	0.82[EUR][1000 genomes]
rs10951181	0.82[EUR][1000 genomes]
rs11761430	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11761467	0.90[CEU][hapmap];1.00[JPT][hapmap];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11763610	0.90[CEU][hapmap];1.00[JPT][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11763861	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11765837	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11768570	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs11769157	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17150567	0.83[CHD][hapmap]
rs17155691	1.00[ASW][hapmap];0.90[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];1.00[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17155744	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];0.91[GIH][hapmap];0.82[JPT][hapmap];0.92[LWK][hapmap];1.00[MEX][hapmap];0.91[TSI][hapmap];0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17155797	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155802	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155863	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17611272	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17684444	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17692264	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17692895	0.81[CEU][hapmap];0.83[CHD][hapmap];0.82[MEX][hapmap]
rs2237344	0.82[EUR][1000 genomes]
rs2285929	0.90[CEU][hapmap];0.89[EUR][1000 genomes]
rs56172733	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62449628	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62449630	0.85[AFR][1000 genomes];0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62449641	0.86[EUR][1000 genomes]
rs62451066	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62451068	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62451069	0.82[EUR][1000 genomes]
rs62451070	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62451071	0.89[EUR][1000 genomes]
rs62454809	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6979972	0.90[CEU][hapmap];1.00[CHD][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes]
rs73075305	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73075333	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73078729	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078746	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078762	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs739900	0.90[CEU][hapmap];0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27729600-27742200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
2	chr7:27732000-27735400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr7:27733400-27735400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr7:27733400-27735400	Enhancers	NHLF	lung
5	chr7:27733800-27737200	Weak transcription	Primary B cells from cord blood	blood
6	chr7:27733800-27737200	Weak transcription	NHDF-Ad	bronchial
7	chr7:27733800-27737400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr7:27733800-27737600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr7:27733800-27737600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr7:27734000-27734800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr7:27734000-27736600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:27734000-27736800	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr7:27734000-27737400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr7:27734000-27737600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr7:27734200-27736600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr7:27734200-27736600	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr7:27734200-27737200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr7:27734200-27742600	Weak transcription	Osteobl	bone
19	chr7:27734400-27737600	Weak transcription	HepG2	liver

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