Variant report

Variant	rs11765837
Chromosome Location	chr7:27766309-27766310
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27700698..27702749-chr7:27766232..27767874,2	K562	blood:
2	chr7:27763575..27766795-chr7:27768308..27771533,3	K562	blood:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction

Extended variants
information (count: 55 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10228505	0.88[ASN][1000 genomes]
rs10228576	0.85[ASN][1000 genomes]
rs10245536	0.88[ASN][1000 genomes]
rs10281008	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486556	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486562	0.88[ASN][1000 genomes]
rs10951178	0.87[EUR][1000 genomes]
rs10951180	0.83[EUR][1000 genomes]
rs10951181	0.83[EUR][1000 genomes]
rs11761430	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761467	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11763610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768570	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769157	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984239	0.88[ASN][1000 genomes]
rs17150567	0.88[ASN][1000 genomes]
rs17155691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155744	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155797	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155863	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17611272	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17684444	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17692264	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237344	0.83[EUR][1000 genomes]
rs2285929	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432782	0.88[ASN][1000 genomes]
rs28693893	0.88[ASN][1000 genomes]
rs28805873	0.88[ASN][1000 genomes]
rs56172733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979783	0.88[ASN][1000 genomes]
rs61179177	0.88[ASN][1000 genomes]
rs61446104	0.88[ASN][1000 genomes]
rs62449628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449641	0.87[EUR][1000 genomes]
rs62451066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451069	0.83[EUR][1000 genomes]
rs62451070	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451071	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62451072	0.88[ASN][1000 genomes]
rs62451074	0.88[ASN][1000 genomes]
rs62451078	0.88[ASN][1000 genomes]
rs62454809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979972	0.84[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73075305	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075333	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73078729	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078746	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739900	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797888	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27760000-27778800	Weak transcription	HSMMtube	muscle
2	chr7:27765800-27766400	Enhancers	Primary hematopoietic stem cells short term culture	blood
3	chr7:27765800-27767000	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr7:27766000-27766400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr7:27766000-27766400	Enhancers	GM12878-XiMat	blood

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