Variant report

Variant	rs73078762
Chromosome Location	chr7:27788354-27788355
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:27785850..27788466-chr7:27796685..27798501,2	K562	blood:
2	chr7:27787733..27790023-chr7:27790214..27791778,2	MCF-7	breast:
3	chr7:27785977..27788365-chr7:27790944..27793123,2	K562	blood:
4	chr7:27784788..27787305-chr7:27787434..27789144,2	K562	blood:
5	chr7:27784566..27786951-chr7:27787434..27790221,3	K562	blood:
6	chr7:27786993..27792954-chr7:27793164..27797918,6	K562	blood:
7	chr7:27777249..27781364-chr7:27781538..27788730,11	MCF-7	breast:
8	chr7:27701253..27703546-chr7:27787214..27789983,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction
ENSG00000229893	Chromatin interaction
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:54)

rs_ID	r²[population]
rs10228505	0.88[ASN][1000 genomes]
rs10228576	0.85[ASN][1000 genomes]
rs10245536	0.88[ASN][1000 genomes]
rs10281008	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486556	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486562	0.88[ASN][1000 genomes]
rs10951178	0.90[EUR][1000 genomes]
rs10951180	0.85[EUR][1000 genomes]
rs10951181	0.85[EUR][1000 genomes]
rs11761430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761467	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11763610	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768570	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769157	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984239	0.88[ASN][1000 genomes]
rs17150567	0.88[ASN][1000 genomes]
rs17155691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155744	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155797	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17611272	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17684444	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17692264	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2237344	0.85[EUR][1000 genomes]
rs2285929	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432782	0.88[ASN][1000 genomes]
rs28693893	0.88[ASN][1000 genomes]
rs28805873	0.88[ASN][1000 genomes]
rs56172733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979783	0.88[ASN][1000 genomes]
rs61179177	0.88[ASN][1000 genomes]
rs61446104	0.88[ASN][1000 genomes]
rs62449628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449641	0.90[EUR][1000 genomes]
rs62451066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451069	0.85[EUR][1000 genomes]
rs62451070	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451071	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62451072	0.88[ASN][1000 genomes]
rs62451074	0.88[ASN][1000 genomes]
rs62451078	0.88[ASN][1000 genomes]
rs62454809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979972	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73075305	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075333	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73078729	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078746	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739900	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797888	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27780800-27788800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr7:27780800-27789400	Weak transcription	Lung	lung
3	chr7:27780800-27796400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr7:27780800-27805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr7:27780800-27810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr7:27780800-27815200	Weak transcription	Gastric	stomach
7	chr7:27781000-27789000	Weak transcription	Fetal Muscle Trunk	muscle
8	chr7:27781000-27800200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
10	chr7:27781200-27788400	Weak transcription	Brain Hippocampus Middle	brain
11	chr7:27781200-27788800	Weak transcription	H1 Cell Line	embryonic stem cell
12	chr7:27781200-27789000	Weak transcription	Fetal Thymus	thymus
13	chr7:27781200-27789400	Weak transcription	Thymus	Thymus
14	chr7:27781200-27789600	Weak transcription	Fetal Brain Female	brain
15	chr7:27781200-27790200	Weak transcription	Fetal Brain Male	brain
16	chr7:27781200-27791800	Weak transcription	Right Ventricle	heart
17	chr7:27781200-27792000	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr7:27781400-27789400	Weak transcription	Fetal Muscle Leg	muscle
19	chr7:27781400-27789600	Weak transcription	Esophagus	oesophagus
20	chr7:27781400-27799600	Weak transcription	Fetal Stomach	stomach
21	chr7:27781400-27803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr7:27781400-27812800	Weak transcription	Brain Germinal Matrix	brain
23	chr7:27784800-27789000	Weak transcription	Brain Inferior Temporal Lobe	brain
24	chr7:27784800-27789000	Weak transcription	Colonic Mucosa	Colon
25	chr7:27784800-27789200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr7:27784800-27789200	Weak transcription	HSMMtube	muscle
27	chr7:27784800-27790400	Weak transcription	Cortex derived primary cultured neurospheres	brain
28	chr7:27784800-27799200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
29	chr7:27784800-27801000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
30	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
31	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr7:27785000-27788400	Weak transcription	GM12878-XiMat	blood
33	chr7:27785000-27788600	Weak transcription	Skeletal Muscle Female	skeletal muscle
34	chr7:27785000-27788800	Weak transcription	HUES6 Cell Line	embryonic stem cell
35	chr7:27785000-27788800	Weak transcription	Placenta Amnion	Placenta Amnion
36	chr7:27785000-27788800	Weak transcription	NHEK	skin
37	chr7:27785000-27789800	Weak transcription	Primary hematopoietic stem cells	blood
38	chr7:27785000-27789800	Weak transcription	Brain Angular Gyrus	brain
39	chr7:27785000-27793200	Weak transcription	Fetal Heart	heart
40	chr7:27785000-27805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr7:27785000-27806200	Weak transcription	Spleen	Spleen
42	chr7:27785000-27825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr7:27785200-27788600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
44	chr7:27785200-27789200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
45	chr7:27785200-27789800	Weak transcription	Fetal Lung	lung
46	chr7:27785200-27789800	Weak transcription	Hela-S3	cervix
47	chr7:27785200-27791000	Weak transcription	Fetal Kidney	kidney
48	chr7:27785200-27809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
49	chr7:27785800-27788600	Weak transcription	HUVEC	blood vessel
50	chr7:27786000-27788400	Enhancers	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links