Variant report

Variant	rs62451068
Chromosome Location	chr7:27827605-27827606
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 59 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10228505	0.94[ASN][1000 genomes]
rs10228576	0.91[ASN][1000 genomes]
rs10245536	0.94[ASN][1000 genomes]
rs10281008	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs10486556	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10486562	0.94[ASN][1000 genomes]
rs10951178	0.85[EUR][1000 genomes]
rs10951180	0.90[EUR][1000 genomes]
rs10951181	0.90[EUR][1000 genomes]
rs11761430	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11761467	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763610	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11763861	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11765837	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11768570	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11769157	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11984239	0.94[ASN][1000 genomes]
rs17150567	0.94[ASN][1000 genomes]
rs17155691	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17155744	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17155797	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155802	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155863	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17611272	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17684444	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17692264	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17692895	0.81[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2237344	0.90[EUR][1000 genomes]
rs2285929	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs28432782	0.94[ASN][1000 genomes]
rs28693893	0.94[ASN][1000 genomes]
rs28805873	0.94[ASN][1000 genomes]
rs56172733	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58979783	0.94[ASN][1000 genomes]
rs61179177	0.94[ASN][1000 genomes]
rs61446104	0.94[ASN][1000 genomes]
rs62449628	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62449630	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62449641	0.85[EUR][1000 genomes]
rs62451066	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451069	0.90[EUR][1000 genomes]
rs62451070	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451071	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451072	0.94[ASN][1000 genomes]
rs62451074	0.94[ASN][1000 genomes]
rs62451078	0.94[ASN][1000 genomes]
rs62454809	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6979972	0.91[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075305	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73075333	0.80[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078729	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs73078746	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73078762	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs739900	0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7797888	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
2	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr7:27790600-27835000	Weak transcription	Brain Cingulate Gyrus	brain
5	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
6	chr7:27798600-27847800	Weak transcription	Rectal Smooth Muscle	rectum
7	chr7:27798600-27874000	Weak transcription	Brain Angular Gyrus	brain
8	chr7:27801200-27851800	Weak transcription	Fetal Brain Male	brain
9	chr7:27801400-27831400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr7:27801400-27838400	Weak transcription	Fetal Brain Female	brain
11	chr7:27801600-27852800	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr7:27805800-27832200	Weak transcription	Fetal Stomach	stomach
13	chr7:27805800-27857600	Weak transcription	Esophagus	oesophagus
14	chr7:27806000-27882600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
15	chr7:27806400-27878600	Weak transcription	Right Ventricle	heart
16	chr7:27806600-27827800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
17	chr7:27810400-27831600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr7:27810400-27831600	Weak transcription	Colon Smooth Muscle	Colon
19	chr7:27810800-27831600	Weak transcription	Duodenum Smooth Muscle	Duodenum
20	chr7:27811200-27832200	Weak transcription	Ovary	ovary
21	chr7:27811200-27833600	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr7:27811400-27831200	Weak transcription	Sigmoid Colon	Sigmoid Colon
23	chr7:27811800-27831400	Weak transcription	Primary hematopoietic stem cells	blood
24	chr7:27811800-27835000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
25	chr7:27812000-27828000	Weak transcription	GM12878-XiMat	blood
26	chr7:27815600-27832400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr7:27815600-27833200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr7:27815600-27874000	Weak transcription	Pancreas	Pancrea
29	chr7:27817400-27831800	Weak transcription	Brain Substantia Nigra	brain
30	chr7:27817400-27836200	Weak transcription	Psoas Muscle	Psoas
31	chr7:27818800-27834800	Weak transcription	Gastric	stomach
32	chr7:27819600-27831200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
33	chr7:27820400-27847400	Weak transcription	Fetal Heart	heart
34	chr7:27820800-27833200	Weak transcription	Brain Germinal Matrix	brain
35	chr7:27820800-27836200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
36	chr7:27823000-27827800	Weak transcription	NHEK	skin
37	chr7:27823400-27831600	Weak transcription	Brain Anterior Caudate	brain
38	chr7:27823800-27878000	Weak transcription	Spleen	Spleen
39	chr7:27824200-27843000	Weak transcription	Pancreatic Islets	Pancreatic Islet
40	chr7:27824200-27876800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
41	chr7:27824400-27828800	Strong transcription	Fetal Thymus	thymus
42	chr7:27824400-27833000	Weak transcription	A549	lung
43	chr7:27824600-27829200	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr7:27824600-27830000	Strong transcription	Placenta	Placenta
45	chr7:27824600-27830000	Strong transcription	Dnd41	blood
46	chr7:27824600-27833400	Weak transcription	Muscle Satellite Cultured Cells	--
47	chr7:27824600-27836600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
48	chr7:27824600-27837000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
49	chr7:27824600-27839000	Strong transcription	Primary T helper cells PMA-I stimulated	--
50	chr7:27824600-27840000	Strong transcription	Monocytes-CD14+_RO01746	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links