Variant report

Variant	rs11763610
Chromosome Location	chr7:27799254-27799255
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:27796996..27799344-chr7:27810656..27812681,2	K562	blood:
2	chr7:27779192..27781381-chr7:27799136..27801395,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000229893	Chromatin interaction
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 62 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10228505	0.88[ASN][1000 genomes]
rs10228576	0.85[ASN][1000 genomes]
rs10245536	0.88[ASN][1000 genomes]
rs10257676	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs10281008	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486556	0.85[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486562	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs10951178	0.90[EUR][1000 genomes]
rs10951180	0.85[EUR][1000 genomes]
rs10951181	0.85[EUR][1000 genomes]
rs11761430	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761467	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761905	1.00[CHB][hapmap]
rs11763861	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765837	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768570	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769157	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11981911	1.00[CHB][hapmap]
rs11984239	0.88[ASN][1000 genomes]
rs17150567	1.00[CHB][hapmap];0.88[ASN][1000 genomes]
rs17155691	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155744	0.90[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155797	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155802	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155863	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17611272	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17684444	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17692264	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17692895	0.90[CEU][hapmap];1.00[CHB][hapmap]
rs2237344	0.85[EUR][1000 genomes]
rs2285929	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432782	0.88[ASN][1000 genomes]
rs28693893	0.88[ASN][1000 genomes]
rs28805873	0.88[ASN][1000 genomes]
rs56172733	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979783	0.88[ASN][1000 genomes]
rs61179177	0.88[ASN][1000 genomes]
rs61446104	0.88[ASN][1000 genomes]
rs62449628	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449630	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449641	0.90[EUR][1000 genomes]
rs62451066	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451068	0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451069	0.85[EUR][1000 genomes]
rs62451070	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451071	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62451072	0.88[ASN][1000 genomes]
rs62451074	0.88[ASN][1000 genomes]
rs62451078	0.88[ASN][1000 genomes]
rs62454809	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979972	1.00[CEU][hapmap];1.00[CHB][hapmap];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73075305	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075333	0.95[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73078729	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078746	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73078762	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739900	1.00[CEU][hapmap];1.00[CHB][hapmap];0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797888	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	esv2758109	chr7:27793616-27972869	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
4	esv2759520	chr7:27793616-27972869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27780800-27805600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr7:27780800-27810200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr7:27780800-27815200	Weak transcription	Gastric	stomach
4	chr7:27781000-27800200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr7:27781000-27861800	Weak transcription	Aorta	Aorta
6	chr7:27781400-27799600	Weak transcription	Fetal Stomach	stomach
7	chr7:27781400-27803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr7:27781400-27812800	Weak transcription	Brain Germinal Matrix	brain
9	chr7:27784800-27801000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr7:27784800-27834000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr7:27784800-27878400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr7:27785000-27805600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr7:27785000-27806200	Weak transcription	Spleen	Spleen
14	chr7:27785000-27825000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr7:27785200-27809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr7:27787000-27804200	Weak transcription	Fetal Intestine Small	intestine
17	chr7:27787600-27805600	Weak transcription	Pancreas	Pancrea
18	chr7:27787600-27825000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
19	chr7:27787800-27826600	Weak transcription	Small Intestine	intestine
20	chr7:27788200-27799400	Strong transcription	Dnd41	blood
21	chr7:27788200-27800400	Weak transcription	Pancreatic Islets	Pancreatic Islet
22	chr7:27788200-27801600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
23	chr7:27788200-27801800	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:27788200-27801800	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
25	chr7:27788200-27802200	Strong transcription	Primary T cells fromperipheralblood	blood
26	chr7:27788400-27801800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
27	chr7:27789000-27800800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
28	chr7:27789000-27801200	Strong transcription	Primary T helper cells PMA-I stimulated	--
29	chr7:27789600-27811000	Weak transcription	Placenta Amnion	Placenta Amnion
30	chr7:27789800-27805400	Weak transcription	Esophagus	oesophagus
31	chr7:27790200-27815200	Weak transcription	Psoas Muscle	Psoas
32	chr7:27790600-27801000	Weak transcription	Fetal Brain Female	brain
33	chr7:27790600-27825000	Weak transcription	NHLF	lung
34	chr7:27790600-27835000	Weak transcription	Brain Cingulate Gyrus	brain
35	chr7:27790600-27857400	Weak transcription	Colonic Mucosa	Colon
36	chr7:27790800-27800600	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr7:27791000-27805400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr7:27791400-27799600	Weak transcription	Fetal Muscle Leg	muscle
39	chr7:27791600-27810000	Weak transcription	Colon Smooth Muscle	Colon
40	chr7:27791800-27805400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
41	chr7:27792000-27801000	Weak transcription	Fetal Brain Male	brain
42	chr7:27792000-27802000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
43	chr7:27792200-27799600	Strong transcription	NHDF-Ad	bronchial
44	chr7:27792200-27800400	Weak transcription	Fetal Muscle Trunk	muscle
45	chr7:27792200-27801000	Weak transcription	Cortex derived primary cultured neurospheres	brain
46	chr7:27792200-27803200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
47	chr7:27792200-27805400	Weak transcription	Left Ventricle	heart
48	chr7:27792200-27805400	Weak transcription	Thymus	Thymus
49	chr7:27792200-27805800	Weak transcription	Right Ventricle	heart
50	chr7:27792200-27810200	Weak transcription	Sigmoid Colon	Sigmoid Colon

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