Variant report

Variant	rs73078746
Chromosome Location	chr7:27770244-27770245
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:27701274..27704256-chr7:27770195..27773183,2	MCF-7	breast:
2	chr7:27768892..27770832-chr7:27772047..27773874,2	K562	blood:
3	chr7:27763575..27766795-chr7:27768308..27771533,3	K562	blood:
4	chr7:27769469..27771937-chr7:27776891..27779801,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000106049	Chromatin interaction
ENSG00000106052	Chromatin interaction

Extended variants
information (count: 52 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:50)

rs_ID	r²[population]
rs10228505	0.88[ASN][1000 genomes]
rs10228576	0.85[ASN][1000 genomes]
rs10245536	0.88[ASN][1000 genomes]
rs10281008	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10486556	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10486562	0.88[ASN][1000 genomes]
rs10951178	0.83[EUR][1000 genomes]
rs11761430	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11761467	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11763610	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11763861	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11765837	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11768570	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11769157	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11984239	0.88[ASN][1000 genomes]
rs17150567	0.88[ASN][1000 genomes]
rs17155691	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17155744	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17155797	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155802	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17155863	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17611272	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17684444	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17692264	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2285929	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs28432782	0.88[ASN][1000 genomes]
rs28693893	0.88[ASN][1000 genomes]
rs28805873	0.88[ASN][1000 genomes]
rs56172733	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58979783	0.88[ASN][1000 genomes]
rs61179177	0.88[ASN][1000 genomes]
rs61446104	0.88[ASN][1000 genomes]
rs62449628	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449630	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62449641	0.83[EUR][1000 genomes]
rs62451066	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62451068	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451070	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62451071	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62451072	0.88[ASN][1000 genomes]
rs62451074	0.88[ASN][1000 genomes]
rs62451078	0.88[ASN][1000 genomes]
rs62454809	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6979972	0.88[ASN][1000 genomes]
rs73075305	1.00[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73075333	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs73078729	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73078762	1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs739900	0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7797888	0.88[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949025	chr7:27578167-28075172	Active TSS Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
2	nsv1028469	chr7:27767795-27939667	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:27760000-27778800	Weak transcription	HSMMtube	muscle
2	chr7:27769000-27771000	Weak transcription	HepG2	liver
3	chr7:27769800-27770600	Enhancers	Pancreas	Pancrea
4	chr7:27769800-27771000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr7:27769800-27771000	Enhancers	K562	blood
6	chr7:27769800-27771200	Enhancers	Gastric	stomach
7	chr7:27770000-27778600	Weak transcription	Right Atrium	heart

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