Variant report

Variant	rs10494976
Chromosome Location	chr1:214620793-214620794
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214615872..214617587-chr1:214619131..214620806,2	MCF-7	breast:
2	chr1:214612014..214614928-chr1:214618939..214621537,2	K562	blood:
3	chr1:214614481..214615989-chr1:214619724..214621377,2	MCF-7	breast:
4	chr1:214611152..214615489-chr1:214618364..214620847,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11810825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17022965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731408	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs17733405	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17733739	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17733829	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4375234	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4379654	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475717	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs4553156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742725	0.94[EUR][1000 genomes]
rs6657103	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6668558	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700707	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
2	chr1:214601600-214633000	Weak transcription	Gastric	stomach
3	chr1:214611800-214623200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr1:214613000-214649400	Weak transcription	Lung	lung
5	chr1:214613200-214628400	Weak transcription	Ovary	ovary
6	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
7	chr1:214616400-214625200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr1:214616600-214622000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
9	chr1:214617000-214621200	Enhancers	Fetal Muscle Leg	muscle
10	chr1:214617000-214621600	Enhancers	HSMMtube	muscle
11	chr1:214617600-214621200	Enhancers	Colon Smooth Muscle	Colon
12	chr1:214617600-214621200	Enhancers	Fetal Stomach	stomach
13	chr1:214617800-214621200	Enhancers	Breast Myoepithelial Primary Cells	Breast
14	chr1:214617800-214622200	Enhancers	Placenta Amnion	Placenta Amnion
15	chr1:214618000-214620800	Enhancers	Dnd41	blood
16	chr1:214618000-214621200	Enhancers	Rectal Smooth Muscle	rectum
17	chr1:214618000-214622200	Enhancers	H1 Cell Line	embryonic stem cell
18	chr1:214618600-214620800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
19	chr1:214618600-214621400	Flanking Active TSS	A549	lung
20	chr1:214618800-214621800	Enhancers	HSMM	muscle
21	chr1:214618800-214621800	Enhancers	NHLF	lung
22	chr1:214618800-214626600	Weak transcription	Left Ventricle	heart
23	chr1:214618800-214627800	Weak transcription	Fetal Heart	heart
24	chr1:214618800-214628000	Weak transcription	Aorta	Aorta
25	chr1:214618800-214628000	Weak transcription	Stomach Smooth Muscle	stomach
26	chr1:214618800-214628200	Weak transcription	Right Ventricle	heart
27	chr1:214619000-214621800	Enhancers	Cortex derived primary cultured neurospheres	brain
28	chr1:214619200-214620800	Enhancers	Brain Anterior Caudate	brain
29	chr1:214619200-214620800	Enhancers	Stomach Mucosa	stomach
30	chr1:214619200-214621600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr1:214619400-214625000	Weak transcription	H9 Cell Line	embryonic stem cell
32	chr1:214619400-214626400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
33	chr1:214619400-214628400	Weak transcription	Thymus	Thymus
34	chr1:214619600-214621000	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
35	chr1:214619600-214621000	Enhancers	Duodenum Smooth Muscle	Duodenum
36	chr1:214619600-214621200	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr1:214619800-214620800	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
38	chr1:214619800-214621000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr1:214619800-214621200	Enhancers	Fetal Kidney	kidney
40	chr1:214620000-214620800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
41	chr1:214620000-214620800	Enhancers	Adipose Nuclei	Adipose
42	chr1:214620000-214621000	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr1:214620000-214621000	Enhancers	Skeletal Muscle Female	skeletal muscle
44	chr1:214620000-214621000	Flanking Active TSS	NHEK	skin
45	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
46	chr1:214620200-214620800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr1:214620200-214620800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
48	chr1:214620200-214620800	Flanking Active TSS	Brain Hippocampus Middle	brain
49	chr1:214620200-214620800	Enhancers	Psoas Muscle	Psoas
50	chr1:214620200-214621000	Flanking Active TSS	iPS-15b Cell Line	embryonic stem cell

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