Variant report

Variant	rs17733829
Chromosome Location	chr1:214638436-214638437
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs10494976	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs10494978	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs11810825	0.87[CEU][hapmap];0.94[EUR][1000 genomes]
rs17022965	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.85[LWK][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17731408	0.85[CEU][hapmap];1.00[TSI][hapmap]
rs17733405	1.00[ASW][hapmap];0.85[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17733739	1.00[ASW][hapmap];0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4379654	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4475717	0.83[CHD][hapmap]
rs4553156	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs4576640	0.87[CEU][hapmap];1.00[EUR][1000 genomes]
rs61742725	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs6657103	1.00[EUR][1000 genomes]
rs6668558	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs6698662	0.85[CEU][hapmap];1.00[EUR][1000 genomes]
rs6700707	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7529722	0.87[CEU][hapmap];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv275028	chr1:214637808-214639253	Genic enhancers Weak transcription Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:70 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214613000-214649400	Weak transcription	Lung	lung
2	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
3	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr1:214627200-214640000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr1:214628600-214640600	Weak transcription	Right Atrium	heart
6	chr1:214628800-214639400	Weak transcription	Stomach Mucosa	stomach
7	chr1:214629200-214644800	Weak transcription	Psoas Muscle	Psoas
8	chr1:214634000-214638600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr1:214634200-214640000	Weak transcription	Fetal Kidney	kidney
10	chr1:214634400-214639800	Weak transcription	Fetal Lung	lung
11	chr1:214634400-214639800	Weak transcription	A549	lung
12	chr1:214634400-214640000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr1:214634400-214644400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
14	chr1:214634400-214645000	Weak transcription	HUVEC	blood vessel
15	chr1:214634400-214646200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
16	chr1:214634800-214640000	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr1:214635000-214638600	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr1:214635800-214645000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:214636000-214638600	Strong transcription	NHLF	lung
20	chr1:214636200-214640600	Weak transcription	Sigmoid Colon	Sigmoid Colon
21	chr1:214636400-214638600	Enhancers	Fetal Heart	heart
22	chr1:214636800-214638600	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr1:214636800-214638600	Genic enhancers	NHEK	skin
24	chr1:214637000-214638800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr1:214637000-214639800	Weak transcription	NH-A	brain
26	chr1:214637000-214640200	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr1:214637200-214639800	Weak transcription	Fetal Muscle Leg	muscle
28	chr1:214637200-214640000	Weak transcription	NHDF-Ad	bronchial
29	chr1:214637200-214645000	Weak transcription	Esophagus	oesophagus
30	chr1:214637400-214639600	Weak transcription	Placenta Amnion	Placenta Amnion
31	chr1:214637400-214641400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr1:214637800-214638800	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
33	chr1:214637800-214640800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr1:214638000-214638600	Enhancers	HMEC	breast
35	chr1:214638000-214639800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
36	chr1:214638000-214639800	Weak transcription	HUES64 Cell Line	embryonic stem cell
37	chr1:214638200-214639000	Genic enhancers	Osteobl	bone
38	chr1:214638200-214639600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr1:214638200-214639600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
40	chr1:214638200-214639800	Weak transcription	H9 Cell Line	embryonic stem cell
41	chr1:214638200-214639800	Weak transcription	Muscle Satellite Cultured Cells	--
42	chr1:214638200-214639800	Weak transcription	Adipose Nuclei	Adipose
43	chr1:214638200-214639800	Weak transcription	Fetal Intestine Small	intestine
44	chr1:214638200-214639800	Weak transcription	Ovary	ovary
45	chr1:214638200-214639800	Weak transcription	Skeletal Muscle Female	skeletal muscle
46	chr1:214638200-214640000	Weak transcription	Fetal Intestine Large	intestine
47	chr1:214638200-214640000	Weak transcription	Pancreas	Pancrea
48	chr1:214638200-214640200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr1:214638200-214642200	Weak transcription	HUES6 Cell Line	embryonic stem cell
50	chr1:214638200-214644400	Weak transcription	iPS-20b Cell Line	embryonic stem cell

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