Variant report

Variant	rs6700707
Chromosome Location	chr1:214629858-214629859
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214607041..214609780-chr1:214629399..214631684,2	K562	blood:
2	chr1:214624866..214627046-chr1:214628260..214630412,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10494976	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs10494978	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11810825	1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17022965	1.00[JPT][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17733405	1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs17733739	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17733829	1.00[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4375234	0.82[JPT][hapmap]
rs4379654	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4553156	1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4576640	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61742725	0.94[EUR][1000 genomes]
rs6657103	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6668558	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698662	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529722	1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]

No data

Chromatin state (count:75 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214633000	Weak transcription	Gastric	stomach
2	chr1:214613000-214649400	Weak transcription	Lung	lung
3	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
4	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
5	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
6	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr1:214621200-214633400	Weak transcription	Fetal Kidney	kidney
9	chr1:214621200-214633600	Weak transcription	Fetal Intestine Small	intestine
10	chr1:214621400-214633400	Weak transcription	HepG2	liver
11	chr1:214621600-214633600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
13	chr1:214624200-214630200	Enhancers	NHDF-Ad	bronchial
14	chr1:214624600-214633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr1:214624800-214630200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
16	chr1:214625000-214631200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
17	chr1:214625200-214630000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr1:214625400-214630200	Enhancers	Skeletal Muscle Female	skeletal muscle
19	chr1:214625800-214633400	Enhancers	Breast Myoepithelial Primary Cells	Breast
20	chr1:214625800-214636800	Weak transcription	Esophagus	oesophagus
21	chr1:214625800-214644800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
22	chr1:214626000-214633200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr1:214626200-214630400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
24	chr1:214626200-214631000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr1:214626600-214630200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
26	chr1:214627000-214630400	Enhancers	Muscle Satellite Cultured Cells	--
27	chr1:214627000-214633400	Weak transcription	H1 Cell Line	embryonic stem cell
28	chr1:214627000-214635000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
29	chr1:214627200-214631000	Enhancers	NH-A	brain
30	chr1:214627200-214631400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr1:214627200-214640000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
32	chr1:214627800-214630200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr1:214627800-214630800	Enhancers	Fetal Heart	heart
34	chr1:214628000-214630200	Enhancers	Colon Smooth Muscle	Colon
35	chr1:214628400-214631400	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr1:214628400-214636800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr1:214628600-214630400	Enhancers	A549	lung
38	chr1:214628600-214630400	Enhancers	Hela-S3	cervix
39	chr1:214628600-214631400	Weak transcription	Left Ventricle	heart
40	chr1:214628600-214636800	Weak transcription	Aorta	Aorta
41	chr1:214628600-214636800	Weak transcription	Fetal Muscle Leg	muscle
42	chr1:214628600-214637600	Weak transcription	Ovary	ovary
43	chr1:214628600-214637800	Weak transcription	H9 Cell Line	embryonic stem cell
44	chr1:214628600-214637800	Weak transcription	Placenta	Placenta
45	chr1:214628600-214640600	Weak transcription	Right Atrium	heart
46	chr1:214628800-214630400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
47	chr1:214628800-214631200	Enhancers	HMEC	breast
48	chr1:214628800-214631600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
49	chr1:214628800-214631800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
50	chr1:214628800-214632600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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