Variant report

Variant	rs6698662
Chromosome Location	chr1:214611723-214611724
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214611152..214615489-chr1:214618364..214620847,4	MCF-7	breast:
2	chr1:214610565..214613807-chr1:214625696..214628799,3	K562	blood:
3	chr1:214596071..214597842-chr1:214611517..214614128,2	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494976	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494978	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11810825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17022965	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731408	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs17733405	1.00[CEU][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17733739	1.00[CEU][hapmap];1.00[EUR][1000 genomes]
rs17733829	0.85[CEU][hapmap];1.00[EUR][1000 genomes]
rs4375234	1.00[CHB][hapmap]
rs4379654	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4475717	0.85[CHB][hapmap]
rs4553156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742725	0.94[EUR][1000 genomes]
rs6657103	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6668558	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6700707	1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:84 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214572600-214612600	Weak transcription	Fetal Intestine Small	intestine
2	chr1:214576800-214612200	Weak transcription	Fetal Intestine Large	intestine
3	chr1:214591400-214612800	Weak transcription	Pancreas	Pancrea
4	chr1:214593200-214613000	Weak transcription	Fetal Muscle Leg	muscle
5	chr1:214593400-214612800	Weak transcription	Ovary	ovary
6	chr1:214594000-214618000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr1:214595400-214612800	Weak transcription	Aorta	Aorta
8	chr1:214596000-214614000	Weak transcription	Right Ventricle	heart
9	chr1:214596800-214612800	Weak transcription	Left Ventricle	heart
10	chr1:214600200-214612800	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr1:214601400-214612800	Weak transcription	Adipose Nuclei	Adipose
12	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
13	chr1:214601600-214633000	Weak transcription	Gastric	stomach
14	chr1:214601800-214612200	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr1:214601800-214613000	Weak transcription	Stomach Mucosa	stomach
16	chr1:214602000-214612600	Weak transcription	HSMMtube	muscle
17	chr1:214602400-214611800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr1:214602800-214617600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr1:214603800-214612000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr1:214604000-214617600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr1:214604600-214612400	Weak transcription	NH-A	brain
22	chr1:214604600-214612800	Weak transcription	NHDF-Ad	bronchial
23	chr1:214604600-214613000	Weak transcription	NHLF	lung
24	chr1:214609800-214612000	Weak transcription	Osteobl	bone
25	chr1:214609800-214612400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
26	chr1:214610400-214612800	Enhancers	Primary hematopoietic stem cells	blood
27	chr1:214610400-214615800	Enhancers	HUVEC	blood vessel
28	chr1:214610400-214620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr1:214610600-214617000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
30	chr1:214610800-214612600	Enhancers	Skeletal Muscle Male	skeletal muscle
31	chr1:214610800-214612800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr1:214611000-214611800	Enhancers	iPS-18 Cell Line	embryonic stem cell
33	chr1:214611000-214612400	Enhancers	A549	lung
34	chr1:214611000-214612600	Enhancers	Skeletal Muscle Female	skeletal muscle
35	chr1:214611000-214612600	Enhancers	Thymus	Thymus
36	chr1:214611000-214612600	Enhancers	Hela-S3	cervix
37	chr1:214611000-214612600	Enhancers	HMEC	breast
38	chr1:214611000-214612800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr1:214611000-214613000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
40	chr1:214611000-214613200	Enhancers	Breast Myoepithelial Primary Cells	Breast
41	chr1:214611000-214614200	Enhancers	iPS-20b Cell Line	embryonic stem cell
42	chr1:214611200-214611800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr1:214611200-214612600	Enhancers	Fetal Heart	heart
44	chr1:214611200-214612800	Enhancers	ES-I3 Cell Line	embryonic stem cell
45	chr1:214611200-214612800	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr1:214611200-214612800	Weak transcription	Rectal Smooth Muscle	rectum
47	chr1:214611200-214613000	Enhancers	HSMM	muscle
48	chr1:214611200-214615400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
49	chr1:214611400-214611800	Enhancers	Fetal Muscle Trunk	muscle
50	chr1:214611400-214611800	Enhancers	Placenta	Placenta

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