Variant report

Variant	rs4379654
Chromosome Location	chr1:214618770-214618771
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:214611152..214615489-chr1:214618364..214620847,4	MCF-7	breast:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494976	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10494978	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11810825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17022965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17731408	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs17733405	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17733739	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17733829	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4375234	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4475717	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs4553156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4576640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61742725	0.94[EUR][1000 genomes]
rs6657103	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6668558	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6698662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6700707	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7529722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:94 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214625200	Weak transcription	Esophagus	oesophagus
2	chr1:214601600-214633000	Weak transcription	Gastric	stomach
3	chr1:214610400-214620600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr1:214611600-214619200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:214611600-214620400	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr1:214611800-214620400	Weak transcription	Fetal Muscle Trunk	muscle
7	chr1:214611800-214623200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr1:214613000-214619800	Weak transcription	Fetal Brain Male	brain
9	chr1:214613000-214649400	Weak transcription	Lung	lung
10	chr1:214613200-214620600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr1:214613200-214620600	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr1:214613200-214628400	Weak transcription	Ovary	ovary
13	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
14	chr1:214613400-214620200	Weak transcription	Brain Angular Gyrus	brain
15	chr1:214613600-214619000	Weak transcription	Cortex derived primary cultured neurospheres	brain
16	chr1:214613600-214619200	Weak transcription	Brain Anterior Caudate	brain
17	chr1:214613600-214619400	Weak transcription	Brain Substantia Nigra	brain
18	chr1:214613600-214620600	Weak transcription	Fetal Lung	lung
19	chr1:214614200-214619200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
20	chr1:214614200-214619200	Weak transcription	Fetal Kidney	kidney
21	chr1:214614400-214620400	Weak transcription	Fetal Intestine Small	intestine
22	chr1:214614600-214619200	Weak transcription	Stomach Mucosa	stomach
23	chr1:214614600-214619600	Weak transcription	Brain Cingulate Gyrus	brain
24	chr1:214614600-214619800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
25	chr1:214614800-214620000	Weak transcription	HepG2	liver
26	chr1:214614800-214620200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr1:214615800-214620600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
28	chr1:214616400-214625200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
29	chr1:214616600-214619400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
30	chr1:214616600-214620600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr1:214616600-214622000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
32	chr1:214616800-214620600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr1:214617000-214618800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
34	chr1:214617000-214619000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
35	chr1:214617000-214619600	Enhancers	Primary hematopoietic stem cells	blood
36	chr1:214617000-214620400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr1:214617000-214620600	Enhancers	Primary hematopoietic stem cells short term culture	blood
38	chr1:214617000-214621200	Enhancers	Fetal Muscle Leg	muscle
39	chr1:214617000-214621600	Enhancers	HSMMtube	muscle
40	chr1:214617400-214620600	Enhancers	HUES48 Cell Line	embryonic stem cell
41	chr1:214617600-214618800	Enhancers	Fetal Heart	heart
42	chr1:214617600-214619400	Enhancers	Skeletal Muscle Male	skeletal muscle
43	chr1:214617600-214620600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
44	chr1:214617600-214620600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
45	chr1:214617600-214621200	Enhancers	Colon Smooth Muscle	Colon
46	chr1:214617600-214621200	Enhancers	Fetal Stomach	stomach
47	chr1:214617800-214620400	Enhancers	Hela-S3	cervix
48	chr1:214617800-214620600	Enhancers	HUVEC	blood vessel
49	chr1:214617800-214621200	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr1:214617800-214622200	Enhancers	Placenta Amnion	Placenta Amnion

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