Variant report

Variant	rs10494978
Chromosome Location	chr1:214625879-214625880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr1:214622847..214626108-chr1:214626290..214628775,3	MCF-7	breast:
2	chr1:214624866..214627046-chr1:214628260..214630412,2	K562	blood:
3	chr1:214610565..214613807-chr1:214625696..214628799,3	K562	blood:

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10494976	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.89[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11810825	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17022965	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs17731408	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[TSI][hapmap]
rs17733405	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17733739	1.00[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs17733829	0.85[CEU][hapmap];0.91[CHD][hapmap];0.93[GIH][hapmap];0.83[MKK][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes]
rs4375234	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs4379654	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4475717	0.85[CHB][hapmap];0.91[CHD][hapmap]
rs4553156	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4576640	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61742725	0.94[EUR][1000 genomes]
rs6657103	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6668558	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6698662	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6700707	1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7529722	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:214601600-214633000	Weak transcription	Gastric	stomach
2	chr1:214613000-214649400	Weak transcription	Lung	lung
3	chr1:214613200-214628400	Weak transcription	Ovary	ovary
4	chr1:214613200-214633400	Weak transcription	Pancreas	Pancrea
5	chr1:214618800-214626600	Weak transcription	Left Ventricle	heart
6	chr1:214618800-214627800	Weak transcription	Fetal Heart	heart
7	chr1:214618800-214628000	Weak transcription	Aorta	Aorta
8	chr1:214618800-214628000	Weak transcription	Stomach Smooth Muscle	stomach
9	chr1:214618800-214628200	Weak transcription	Right Ventricle	heart
10	chr1:214619400-214626400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
11	chr1:214619400-214628400	Weak transcription	Thymus	Thymus
12	chr1:214620000-214637400	Weak transcription	Fetal Brain Male	brain
13	chr1:214620600-214628200	Weak transcription	Fetal Thymus	thymus
14	chr1:214620800-214626200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
15	chr1:214620800-214626200	Weak transcription	Psoas Muscle	Psoas
16	chr1:214620800-214636800	Weak transcription	Adipose Nuclei	Adipose
17	chr1:214620800-214637800	Weak transcription	Fetal Muscle Trunk	muscle
18	chr1:214621000-214626600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr1:214621000-214628200	Weak transcription	Placenta	Placenta
20	chr1:214621000-214639800	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr1:214621200-214626600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr1:214621200-214627600	Weak transcription	Rectal Smooth Muscle	rectum
23	chr1:214621200-214633400	Weak transcription	Fetal Kidney	kidney
24	chr1:214621200-214633600	Weak transcription	Fetal Intestine Small	intestine
25	chr1:214621400-214633400	Weak transcription	HepG2	liver
26	chr1:214621600-214633600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
27	chr1:214622200-214626600	Weak transcription	Placenta Amnion	Placenta Amnion
28	chr1:214622200-214627800	Weak transcription	Hela-S3	cervix
29	chr1:214624000-214634600	Weak transcription	Fetal Stomach	stomach
30	chr1:214624200-214626000	Genic enhancers	Osteobl	bone
31	chr1:214624200-214630200	Enhancers	NHDF-Ad	bronchial
32	chr1:214624600-214628400	Enhancers	HMEC	breast
33	chr1:214624600-214633800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr1:214624800-214626200	Enhancers	Muscle Satellite Cultured Cells	--
35	chr1:214624800-214628600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
36	chr1:214624800-214630200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr1:214625000-214627000	Enhancers	Fetal Muscle Leg	muscle
38	chr1:214625000-214627200	Enhancers	H9 Cell Line	embryonic stem cell
39	chr1:214625000-214627800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
40	chr1:214625000-214631200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr1:214625200-214626000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
42	chr1:214625200-214627000	Enhancers	H1 Cell Line	embryonic stem cell
43	chr1:214625200-214627400	Enhancers	HUES48 Cell Line	embryonic stem cell
44	chr1:214625200-214630000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr1:214625400-214626200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
46	chr1:214625400-214626600	Enhancers	HUVEC	blood vessel
47	chr1:214625400-214626800	Enhancers	iPS-15b Cell Line	embryonic stem cell
48	chr1:214625400-214627200	Enhancers	iPS-20b Cell Line	embryonic stem cell
49	chr1:214625400-214627400	Enhancers	HUES64 Cell Line	embryonic stem cell
50	chr1:214625400-214628000	Weak transcription	Colon Smooth Muscle	Colon

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