Variant report

Variant	rs10500728
Chromosome Location	chr11:10628786-10628787
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10628715..10631379-chr11:10733755..10736370,2	K562	blood:
2	chr11:10623393..10626266-chr11:10628128..10630902,3	K562	blood:
3	chr11:10607679..10609849-chr11:10628348..10630099,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11821864	1.00[CEU][hapmap];0.90[EUR][1000 genomes]
rs16907959	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs16908041	0.91[AFR][1000 genomes]
rs16908056	0.88[AFR][1000 genomes]
rs55637826	0.90[EUR][1000 genomes]
rs56070854	0.90[EUR][1000 genomes]
rs72859117	0.89[EUR][1000 genomes]
rs72861010	0.90[EUR][1000 genomes]
rs72861016	0.90[EUR][1000 genomes]
rs72861018	0.90[EUR][1000 genomes]
rs72861030	0.90[EUR][1000 genomes]
rs72861037	0.90[EUR][1000 genomes]
rs72861047	0.90[EUR][1000 genomes]
rs72861063	0.90[EUR][1000 genomes]
rs72861079	0.90[EUR][1000 genomes]
rs72861081	0.90[EUR][1000 genomes]
rs72861083	0.90[EUR][1000 genomes]
rs72861085	0.90[EUR][1000 genomes]
rs72861095	0.90[EUR][1000 genomes]
rs72861097	0.90[EUR][1000 genomes]
rs72861101	0.90[EUR][1000 genomes]
rs72862310	0.90[EUR][1000 genomes]
rs72862320	0.90[EUR][1000 genomes]
rs72862323	0.90[EUR][1000 genomes]
rs72862324	0.90[EUR][1000 genomes]
rs72862327	0.90[EUR][1000 genomes]
rs72862332	0.90[EUR][1000 genomes]
rs72862333	0.90[EUR][1000 genomes]
rs72862335	0.90[EUR][1000 genomes]
rs72862385	1.00[EUR][1000 genomes]
rs72862390	0.90[EUR][1000 genomes]
rs9292	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
2	nsv832063	chr11:10618485-10785281	ZNF genes & repeats Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:80 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:10620200-10635800	Strong transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:10620400-10630000	Enhancers	Fetal Muscle Leg	muscle
5	chr11:10620400-10630200	Enhancers	Fetal Thymus	thymus
6	chr11:10622400-10629200	Strong transcription	Aorta	Aorta
7	chr11:10622800-10632800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
8	chr11:10623000-10629000	Weak transcription	Colonic Mucosa	Colon
9	chr11:10623400-10635400	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr11:10624800-10630000	Enhancers	Placenta Amnion	Placenta Amnion
11	chr11:10624800-10632800	Enhancers	Thymus	Thymus
12	chr11:10625000-10629200	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr11:10625000-10629200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr11:10625000-10629800	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr11:10625000-10631800	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
16	chr11:10625200-10630200	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
17	chr11:10625200-10630200	Genic enhancers	Fetal Stomach	stomach
18	chr11:10625400-10629200	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr11:10625400-10632000	Enhancers	Primary hematopoietic stem cells short term culture	blood
20	chr11:10625600-10629400	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr11:10625600-10629600	Enhancers	NHDF-Ad	bronchial
22	chr11:10626000-10628800	Weak transcription	Left Ventricle	heart
23	chr11:10626000-10629000	Weak transcription	Psoas Muscle	Psoas
24	chr11:10626000-10629600	Enhancers	Fetal Lung	lung
25	chr11:10626200-10628800	Enhancers	NHEK	skin
26	chr11:10626200-10629000	Flanking Active TSS	Primary hematopoietic stem cells	blood
27	chr11:10626400-10629400	Enhancers	HepG2	liver
28	chr11:10626600-10629800	Strong transcription	Colon Smooth Muscle	Colon
29	chr11:10626600-10630200	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:10626600-10631000	Weak transcription	Stomach Mucosa	stomach
31	chr11:10626800-10628800	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
32	chr11:10626800-10632200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:10627000-10629400	Genic enhancers	Duodenum Smooth Muscle	Duodenum
34	chr11:10627000-10629600	Enhancers	Spleen	Spleen
35	chr11:10627200-10628800	Enhancers	Primary T cells from cord blood	blood
36	chr11:10627200-10629000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
37	chr11:10627200-10629200	Enhancers	ES-I3 Cell Line	embryonic stem cell
38	chr11:10627200-10629200	Enhancers	Ovary	ovary
39	chr11:10627200-10629200	Enhancers	Right Atrium	heart
40	chr11:10627200-10629400	Enhancers	Lung	lung
41	chr11:10627200-10629600	Genic enhancers	NHLF	lung
42	chr11:10627400-10628800	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:10627400-10628800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
44	chr11:10627400-10628800	Enhancers	HMEC	breast
45	chr11:10627400-10629000	Flanking Active TSS	Primary B cells from peripheral blood	blood
46	chr11:10627400-10629000	Enhancers	Skeletal Muscle Female	skeletal muscle
47	chr11:10627400-10629000	Enhancers	K562	blood
48	chr11:10627400-10629200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
49	chr11:10627400-10629400	Enhancers	Fetal Kidney	kidney
50	chr11:10627400-10630000	Enhancers	Duodenum Mucosa	Duodenum

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