Variant report

Variant	rs55637826
Chromosome Location	chr11:10591801-10591802
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10569352..10571192-chr11:10591337..10594037,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10500728	0.90[EUR][1000 genomes]
rs11821864	1.00[EUR][1000 genomes]
rs12099382	0.90[EUR][1000 genomes]
rs16907959	0.90[EUR][1000 genomes]
rs2403331	0.90[EUR][1000 genomes]
rs55657367	0.90[EUR][1000 genomes]
rs55676441	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55897150	0.90[EUR][1000 genomes]
rs56070854	1.00[EUR][1000 genomes]
rs56399907	1.00[AMR][1000 genomes]
rs72859111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859115	0.90[EUR][1000 genomes]
rs72859152	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859180	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859181	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859188	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859201	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72861010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861016	1.00[EUR][1000 genomes]
rs72861018	1.00[EUR][1000 genomes]
rs72861030	1.00[EUR][1000 genomes]
rs72861037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861079	1.00[EUR][1000 genomes]
rs72861081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861083	1.00[EUR][1000 genomes]
rs72861085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862310	1.00[EUR][1000 genomes]
rs72862320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862327	1.00[EUR][1000 genomes]
rs72862332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862333	1.00[EUR][1000 genomes]
rs72862335	1.00[EUR][1000 genomes]
rs72862385	0.90[EUR][1000 genomes]
rs72862390	0.81[EUR][1000 genomes]
rs9292	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
3	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
4	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
5	chr11:10583600-10595800	Weak transcription	Colon Smooth Muscle	Colon
6	chr11:10586200-10594400	Weak transcription	Fetal Stomach	stomach
7	chr11:10586200-10594800	Weak transcription	Spleen	Spleen
8	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
9	chr11:10586600-10594000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr11:10587200-10594200	Weak transcription	Primary B cells from cord blood	blood
11	chr11:10587200-10594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:10587200-10595600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
13	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:10588200-10594400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr11:10588400-10595800	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr11:10588600-10592000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
17	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:10589000-10594000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr11:10589000-10595000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr11:10589800-10592000	Enhancers	Left Ventricle	heart
21	chr11:10590000-10592000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr11:10590000-10592000	Enhancers	H1 Cell Line	embryonic stem cell
23	chr11:10590000-10592000	Enhancers	HUES6 Cell Line	embryonic stem cell
24	chr11:10590200-10592000	Enhancers	iPS-18 Cell Line	embryonic stem cell
25	chr11:10590200-10592600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr11:10590200-10594400	Weak transcription	Duodenum Smooth Muscle	Duodenum
27	chr11:10590200-10595000	Weak transcription	Fetal Muscle Trunk	muscle
28	chr11:10590200-10595000	Weak transcription	Placenta	Placenta
29	chr11:10590200-10597000	Weak transcription	Fetal Lung	lung
30	chr11:10590200-10597600	Weak transcription	Rectal Smooth Muscle	rectum
31	chr11:10590400-10597000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
32	chr11:10590600-10594000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr11:10590600-10594800	Weak transcription	Lung	lung
34	chr11:10590600-10594800	Weak transcription	Right Ventricle	heart
35	chr11:10590600-10594800	Weak transcription	Stomach Smooth Muscle	stomach
36	chr11:10590600-10595200	Weak transcription	Brain Hippocampus Middle	brain
37	chr11:10590600-10595600	Weak transcription	Ovary	ovary
38	chr11:10590600-10600200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
39	chr11:10590600-10601600	Weak transcription	Adipose Nuclei	Adipose
40	chr11:10590600-10605600	Weak transcription	NH-A	brain
41	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
42	chr11:10590800-10592000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
43	chr11:10590800-10593200	Weak transcription	Skeletal Muscle Male	skeletal muscle
44	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
45	chr11:10591200-10592000	Enhancers	Aorta	Aorta
46	chr11:10591400-10592000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
47	chr11:10591400-10592000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
48	chr11:10591400-10592600	Enhancers	Primary B cells from peripheral blood	blood
49	chr11:10591400-10603200	Weak transcription	Osteobl	bone
50	chr11:10591600-10592000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links