Variant report

Variant	rs72861085
Chromosome Location	chr11:10602581-10602582
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10601941..10604127-chr11:10608472..10610225,2	K562	blood:
2	chr11:10601475..10602988-chr11:10620423..10622193,2	K562	blood:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10500728	0.90[EUR][1000 genomes]
rs11821864	1.00[EUR][1000 genomes]
rs12099382	0.90[EUR][1000 genomes]
rs16907959	0.90[EUR][1000 genomes]
rs2403331	0.90[EUR][1000 genomes]
rs55637826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55657367	0.90[EUR][1000 genomes]
rs55676441	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55897150	0.90[EUR][1000 genomes]
rs56070854	1.00[EUR][1000 genomes]
rs56399907	1.00[AMR][1000 genomes]
rs72859111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859115	0.90[EUR][1000 genomes]
rs72859152	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859180	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859181	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859188	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859201	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72861010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861016	1.00[EUR][1000 genomes]
rs72861018	1.00[EUR][1000 genomes]
rs72861030	1.00[EUR][1000 genomes]
rs72861037	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861079	1.00[EUR][1000 genomes]
rs72861081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861083	1.00[EUR][1000 genomes]
rs72861095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862310	1.00[EUR][1000 genomes]
rs72862320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862327	1.00[EUR][1000 genomes]
rs72862332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862333	1.00[EUR][1000 genomes]
rs72862335	1.00[EUR][1000 genomes]
rs72862385	0.90[EUR][1000 genomes]
rs72862390	0.81[EUR][1000 genomes]
rs9292	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:66 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
3	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
4	chr11:10587600-10605000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr11:10588600-10602800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr11:10590600-10605600	Weak transcription	NH-A	brain
7	chr11:10590600-10611200	Weak transcription	Pancreas	Pancrea
8	chr11:10590800-10608200	Weak transcription	NHDF-Ad	bronchial
9	chr11:10591400-10603200	Weak transcription	Osteobl	bone
10	chr11:10592000-10602800	Weak transcription	Brain Cingulate Gyrus	brain
11	chr11:10592000-10608000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr11:10592400-10622600	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:10593400-10605000	Weak transcription	Gastric	stomach
14	chr11:10594000-10603600	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr11:10594000-10605000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:10594400-10606000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
17	chr11:10595000-10629600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr11:10595000-10632800	Weak transcription	Brain Inferior Temporal Lobe	brain
19	chr11:10595400-10615400	Weak transcription	Brain Angular Gyrus	brain
20	chr11:10595600-10603200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr11:10595800-10602600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr11:10595800-10605200	Strong transcription	Aorta	Aorta
23	chr11:10595800-10608400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:10597200-10605600	Weak transcription	Colonic Mucosa	Colon
25	chr11:10597200-10625800	Weak transcription	Rectal Mucosa Donor 29	rectum
26	chr11:10597800-10602800	Weak transcription	Right Atrium	heart
27	chr11:10597800-10602800	Weak transcription	HSMMtube	muscle
28	chr11:10598000-10602600	Weak transcription	Fetal Muscle Leg	muscle
29	chr11:10598000-10608200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
30	chr11:10598200-10605400	Weak transcription	Psoas Muscle	Psoas
31	chr11:10599000-10603200	Strong transcription	Ovary	ovary
32	chr11:10599000-10605800	Enhancers	Primary B cells from peripheral blood	blood
33	chr11:10600000-10602800	Enhancers	Primary B cells from cord blood	blood
34	chr11:10600000-10603200	Strong transcription	Fetal Intestine Large	intestine
35	chr11:10600000-10606000	Enhancers	Primary monocytes fromperipheralblood	blood
36	chr11:10600200-10603000	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
37	chr11:10600200-10605000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
38	chr11:10600200-10606800	Enhancers	HUVEC	blood vessel
39	chr11:10600400-10602800	Strong transcription	NHLF	lung
40	chr11:10600400-10605800	Genic enhancers	Stomach Smooth Muscle	stomach
41	chr11:10600400-10605800	Enhancers	Spleen	Spleen
42	chr11:10600400-10608000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr11:10600800-10602800	Weak transcription	K562	blood
44	chr11:10601000-10602600	Weak transcription	Brain Substantia Nigra	brain
45	chr11:10601000-10602600	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr11:10601000-10603400	Genic enhancers	Colon Smooth Muscle	Colon
47	chr11:10601200-10605800	Enhancers	Placenta	Placenta
48	chr11:10601200-10606600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr11:10601200-10607000	Enhancers	Primary hematopoietic stem cells	blood
50	chr11:10601200-10611800	Enhancers	Primary hematopoietic stem cells short term culture	blood

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