Variant report
| Variant | rs72861030 |
|---|---|
| Chromosome Location | chr11:10574595-10574596 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000246308 | Chromatin interaction |
| ENSG00000110321 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:41)
| rs_ID | r2[population] |
|---|---|
| rs10500728 | 0.90[EUR][1000 genomes] |
| rs11821864 | 1.00[EUR][1000 genomes] |
| rs12099382 | 0.90[EUR][1000 genomes] |
| rs16907959 | 0.90[EUR][1000 genomes] |
| rs2403331 | 0.90[EUR][1000 genomes] |
| rs55637826 | 1.00[EUR][1000 genomes] |
| rs55657367 | 0.90[EUR][1000 genomes] |
| rs55676441 | 0.90[EUR][1000 genomes] |
| rs55897150 | 0.90[EUR][1000 genomes] |
| rs56070854 | 1.00[EUR][1000 genomes] |
| rs72859111 | 0.90[EUR][1000 genomes] |
| rs72859115 | 0.90[EUR][1000 genomes] |
| rs72859152 | 0.90[EUR][1000 genomes] |
| rs72859180 | 0.90[EUR][1000 genomes] |
| rs72859181 | 0.90[EUR][1000 genomes] |
| rs72859188 | 0.90[EUR][1000 genomes] |
| rs72859201 | 0.90[EUR][1000 genomes] |
| rs72861010 | 1.00[EUR][1000 genomes] |
| rs72861016 | 1.00[EUR][1000 genomes] |
| rs72861018 | 1.00[EUR][1000 genomes] |
| rs72861037 | 1.00[EUR][1000 genomes] |
| rs72861047 | 1.00[EUR][1000 genomes] |
| rs72861063 | 1.00[EUR][1000 genomes] |
| rs72861079 | 1.00[EUR][1000 genomes] |
| rs72861081 | 1.00[EUR][1000 genomes] |
| rs72861083 | 1.00[EUR][1000 genomes] |
| rs72861085 | 1.00[EUR][1000 genomes] |
| rs72861095 | 1.00[EUR][1000 genomes] |
| rs72861097 | 1.00[EUR][1000 genomes] |
| rs72861101 | 1.00[EUR][1000 genomes] |
| rs72862310 | 1.00[EUR][1000 genomes] |
| rs72862320 | 1.00[EUR][1000 genomes] |
| rs72862323 | 1.00[EUR][1000 genomes] |
| rs72862324 | 1.00[EUR][1000 genomes] |
| rs72862327 | 1.00[EUR][1000 genomes] |
| rs72862332 | 1.00[EUR][1000 genomes] |
| rs72862333 | 1.00[EUR][1000 genomes] |
| rs72862335 | 1.00[EUR][1000 genomes] |
| rs72862385 | 0.90[EUR][1000 genomes] |
| rs72862390 | 0.81[EUR][1000 genomes] |
| rs9292 | 0.90[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv430319 | chr11:10027543-10711224 | Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNAmiRNA target site | 75 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr11:10573000-10603200 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 2 | chr11:10573400-10578200 | Weak transcription | Foreskin Fibroblast Primary Cells skin01 | Skin |
| 3 | chr11:10573600-10578400 | Weak transcription | Fetal Adrenal Gland | Adrenal Gland |
| 4 | chr11:10574000-10578000 | Weak transcription | Primary neutrophils fromperipheralblood | blood |
