Variant report

Variant	rs55657367
Chromosome Location	chr11:10587272-10587273
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:10586141..10588263-chr11:10828344..10830419,2	K562	blood:
2	chr11:10554356..10555938-chr11:10584656..10587351,2	K562	blood:
3	chr11:10563286..10564980-chr11:10587145..10589846,2	K562	blood:

Variant related genes	Relation type
ENSG00000110321	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs1035692	1.00[AMR][1000 genomes]
rs11821864	0.90[EUR][1000 genomes]
rs1559653	1.00[AMR][1000 genomes]
rs55637826	0.90[EUR][1000 genomes]
rs56070854	0.90[EUR][1000 genomes]
rs7124011	1.00[AMR][1000 genomes]
rs72859117	1.00[AMR][1000 genomes]
rs72861010	0.90[EUR][1000 genomes]
rs72861016	0.90[EUR][1000 genomes]
rs72861018	0.90[EUR][1000 genomes]
rs72861030	0.90[EUR][1000 genomes]
rs72861037	0.90[EUR][1000 genomes]
rs72861047	0.90[EUR][1000 genomes]
rs72861063	0.90[EUR][1000 genomes]
rs72861079	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72861081	0.90[EUR][1000 genomes]
rs72861083	0.90[EUR][1000 genomes]
rs72861085	0.90[EUR][1000 genomes]
rs72861095	0.90[EUR][1000 genomes]
rs72861097	0.90[EUR][1000 genomes]
rs72861101	0.90[EUR][1000 genomes]
rs72862310	0.90[EUR][1000 genomes]
rs72862320	0.90[EUR][1000 genomes]
rs72862323	0.90[EUR][1000 genomes]
rs72862324	0.90[EUR][1000 genomes]
rs72862327	0.90[EUR][1000 genomes]
rs72862332	0.90[EUR][1000 genomes]
rs72862333	0.90[EUR][1000 genomes]
rs72862335	0.90[EUR][1000 genomes]
rs72862385	1.00[AMR][1000 genomes]
rs72862390	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10578200-10590000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr11:10580400-10588000	Weak transcription	Liver	Liver
4	chr11:10580400-10590000	Weak transcription	Ovary	ovary
5	chr11:10580600-10609800	Weak transcription	Thymus	Thymus
6	chr11:10583000-10588000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr11:10583000-10600000	Weak transcription	Fetal Intestine Large	intestine
8	chr11:10583200-10588200	Weak transcription	HUVEC	blood vessel
9	chr11:10583200-10601800	Weak transcription	Fetal Intestine Small	intestine
10	chr11:10583600-10595800	Weak transcription	Colon Smooth Muscle	Colon
11	chr11:10583800-10587600	Enhancers	Primary B cells from peripheral blood	blood
12	chr11:10584000-10589800	Weak transcription	Lung	lung
13	chr11:10584000-10591200	Weak transcription	Aorta	Aorta
14	chr11:10585000-10590400	Weak transcription	Brain Cingulate Gyrus	brain
15	chr11:10585800-10590000	Active TSS	Placenta	Placenta
16	chr11:10586000-10588400	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:10586000-10590400	Active TSS	Adipose Nuclei	Adipose
18	chr11:10586200-10594400	Weak transcription	Fetal Stomach	stomach
19	chr11:10586200-10594800	Weak transcription	Spleen	Spleen
20	chr11:10586400-10620400	Weak transcription	Brain Anterior Caudate	brain
21	chr11:10586600-10594000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr11:10586800-10587400	Flanking Active TSS	Fetal Adrenal Gland	Adrenal Gland
23	chr11:10586800-10588000	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr11:10586800-10588400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr11:10586800-10588600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr11:10586800-10590200	Weak transcription	NHDF-Ad	bronchial
27	chr11:10587200-10588000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr11:10587200-10588600	Enhancers	Monocytes-CD14+_RO01746	blood
29	chr11:10587200-10594200	Weak transcription	Primary B cells from cord blood	blood
30	chr11:10587200-10594400	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr11:10587200-10595600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived

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