Variant report

Variant	rs72861037
Chromosome Location	chr11:10576267-10576268
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:10576017..10579798-chr11:10580580..10584419,4	K562	blood:
2	chr11:10573677..10575322-chr11:10575769..10577881,2	MCF-7	breast:

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:42)

rs_ID	r²[population]
rs10500728	0.90[EUR][1000 genomes]
rs11821864	1.00[EUR][1000 genomes]
rs12099382	0.90[EUR][1000 genomes]
rs16907959	0.90[EUR][1000 genomes]
rs2403331	0.90[EUR][1000 genomes]
rs55637826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55657367	0.90[EUR][1000 genomes]
rs55676441	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs55897150	0.90[EUR][1000 genomes]
rs56070854	1.00[EUR][1000 genomes]
rs56399907	1.00[AMR][1000 genomes]
rs72859111	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859115	0.90[EUR][1000 genomes]
rs72859152	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859180	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859181	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859188	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72859201	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs72861010	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861016	1.00[EUR][1000 genomes]
rs72861018	1.00[EUR][1000 genomes]
rs72861030	1.00[EUR][1000 genomes]
rs72861047	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861063	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861079	1.00[EUR][1000 genomes]
rs72861081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861083	1.00[EUR][1000 genomes]
rs72861085	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861095	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861097	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72861101	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862310	1.00[EUR][1000 genomes]
rs72862320	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862323	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862324	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862327	1.00[EUR][1000 genomes]
rs72862332	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72862333	1.00[EUR][1000 genomes]
rs72862335	1.00[EUR][1000 genomes]
rs72862385	0.90[EUR][1000 genomes]
rs72862390	0.81[EUR][1000 genomes]
rs9292	0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430319	chr11:10027543-10711224	Enhancers Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	75 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:10573000-10603200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:10573400-10578200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
3	chr11:10573600-10578400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr11:10574000-10578000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr11:10575000-10580200	Weak transcription	Aorta	Aorta
6	chr11:10575800-10576400	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr11:10576000-10585800	Weak transcription	Placenta	Placenta
8	chr11:10576200-10576400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr11:10576200-10577600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:10576200-10578000	Weak transcription	H1 Cell Line	embryonic stem cell
11	chr11:10576200-10583600	Weak transcription	Spleen	Spleen

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