Variant report

Variant	rs10504103
Chromosome Location	chr8:51226277-51226278
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr8:51219065..51222213-chr8:51225649..51228332,3	K562	blood:

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10101137	0.86[EUR][1000 genomes]
rs10504100	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10504106	0.83[CEU][hapmap];0.82[JPT][hapmap]
rs1117213	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs11782140	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12156091	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12540980	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12541382	0.82[JPT][hapmap]
rs12541707	1.00[JPT][hapmap]
rs12544425	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12545003	0.83[CEU][hapmap]
rs12547038	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12547242	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs12548399	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs13257386	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs13257851	0.83[CEU][hapmap]
rs13260506	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs13261341	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs13282203	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs1450131	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1450136	1.00[CHB][hapmap]
rs1466128	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1470680	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1481471	0.83[CEU][hapmap]
rs1548073	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1597432	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs1597433	0.94[CEU][hapmap];0.91[EUR][1000 genomes]
rs16914780	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs17769846	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1947254	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2044777	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2044778	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs28669842	0.87[EUR][1000 genomes]
rs2957598	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs2957599	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34113623	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34365466	0.81[AMR][1000 genomes];0.90[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs34530560	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35894781	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147344	0.81[CEU][hapmap]
rs4242460	0.87[EUR][1000 genomes]
rs4256602	0.81[CEU][hapmap]
rs4263785	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4339654	0.83[CEU][hapmap]
rs4379460	1.00[CEU][hapmap];1.00[JPT][hapmap];0.87[EUR][1000 genomes]
rs4410921	0.81[CEU][hapmap]
rs4534138	1.00[CEU][hapmap];0.92[EUR][1000 genomes]
rs4873453	0.86[EUR][1000 genomes]
rs62517613	0.87[EUR][1000 genomes]
rs62517614	0.87[EUR][1000 genomes]
rs7005672	0.83[CEU][hapmap]
rs7015950	0.83[CEU][hapmap]
rs7820992	0.83[CEU][hapmap];1.00[JPT][hapmap]
rs7839253	0.83[CEU][hapmap]
rs896023	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs930671	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:39 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv470212	chr8:51176635-51227506	Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv6185	chr8:51213648-51237196	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv3420535	chr8:51223299-51227997	Weak transcription Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	esv2437712	chr8:51224383-51229129	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
7	esv5640	chr8:51224773-51228586	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
8	esv2077062	chr8:51224808-51228484	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3479195	chr8:51224847-51228421	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
10	esv2593415	chr8:51224848-51228925	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv824625	chr8:51224877-51228347	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
12	esv3479196	chr8:51224901-51228389	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
13	esv3479193	chr8:51224912-51228348	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
14	esv3479192	chr8:51224919-51228339	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
15	esv4199	chr8:51224948-51228391	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
16	nsv515087	chr8:51224963-51228295	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
17	nsv824626	chr8:51224963-51228347	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
18	esv3479194	chr8:51224969-51228319	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
19	nsv499696	chr8:51224982-51228318	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
20	esv3479198	chr8:51224983-51228318	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
21	nsv824627	chr8:51224985-51228347	Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
22	esv12849	chr8:51225015-51228269	Inactive region	Chromatin interactive region	n/a	n/a	diseases
23	esv1825020	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
24	esv1828300	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
25	esv1828619	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
26	esv1829341	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
27	esv1831684	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
28	esv1831818	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
29	esv1831964	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
30	esv1832718	chr8:51225111-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
31	nsv611348	chr8:51225111-51228178	Inactive region	Chromatin interactive region	n/a	n/a	diseases
32	esv1828291	chr8:51225111-51246823	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
33	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
34	esv1827479	chr8:51225363-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
35	esv1829733	chr8:51225363-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
36	esv1833373	chr8:51225363-51228134	Inactive region	Chromatin interactive region	n/a	n/a	diseases
37	nsv611349	chr8:51225363-51228178	Inactive region	Chromatin interactive region	n/a	n/a	diseases
38	esv1830624	chr8:51225363-51230812	Inactive region	Chromatin interactive region	n/a	n/a	diseases
39	esv1827302	chr8:51225496-51246823	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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