Variant report

Variant	rs4242460
Chromosome Location	chr8:51295574-51295575
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 74 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:71)

rs_ID	r²[population]
rs10086867	0.82[ASN][1000 genomes]
rs10101137	0.99[EUR][1000 genomes]
rs10504100	0.87[EUR][1000 genomes]
rs1117213	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs11782140	1.00[EUR][1000 genomes]
rs11783674	0.85[ASN][1000 genomes]
rs12156091	1.00[EUR][1000 genomes]
rs12540980	1.00[EUR][1000 genomes]
rs12544425	1.00[EUR][1000 genomes]
rs12545003	0.80[ASN][1000 genomes]
rs12546829	0.84[ASN][1000 genomes]
rs12547038	0.87[EUR][1000 genomes]
rs12547242	1.00[EUR][1000 genomes]
rs12548399	0.92[EUR][1000 genomes]
rs12675994	1.00[ASN][1000 genomes]
rs12679464	0.84[ASN][1000 genomes]
rs13257386	1.00[EUR][1000 genomes]
rs13257851	0.80[AMR][1000 genomes]
rs13260506	1.00[EUR][1000 genomes]
rs13261341	1.00[EUR][1000 genomes]
rs13278343	0.84[ASN][1000 genomes]
rs13282203	1.00[EUR][1000 genomes]
rs1375942	0.83[ASN][1000 genomes]
rs1450131	0.92[EUR][1000 genomes]
rs1466128	0.92[EUR][1000 genomes]
rs1470680	0.87[EUR][1000 genomes]
rs1481471	0.80[ASN][1000 genomes]
rs1548073	0.92[EUR][1000 genomes]
rs1597432	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1597433	0.91[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914780	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs16914781	0.82[ASN][1000 genomes]
rs1947254	0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2044777	0.92[EUR][1000 genomes]
rs2044778	0.89[EUR][1000 genomes]
rs28669842	1.00[EUR][1000 genomes]
rs2923059	0.84[ASN][1000 genomes]
rs2923062	0.84[ASN][1000 genomes]
rs2957598	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2957599	0.92[EUR][1000 genomes]
rs2957600	0.82[ASN][1000 genomes]
rs2957601	0.84[ASN][1000 genomes]
rs34113623	0.87[EUR][1000 genomes]
rs34365466	0.90[EUR][1000 genomes]
rs34530560	0.87[EUR][1000 genomes]
rs35063719	1.00[ASN][1000 genomes]
rs35894781	0.92[EUR][1000 genomes]
rs4147344	0.84[ASN][1000 genomes]
rs4256602	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs4263785	1.00[EUR][1000 genomes]
rs4292700	0.84[ASN][1000 genomes]
rs4339654	1.00[ASN][1000 genomes]
rs4364645	0.84[ASN][1000 genomes]
rs4379460	1.00[EUR][1000 genomes]
rs4410921	1.00[ASN][1000 genomes]
rs4529480	0.84[ASN][1000 genomes]
rs4534138	0.92[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4604450	1.00[ASN][1000 genomes]
rs4639524	0.86[ASN][1000 genomes]
rs4873453	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62517613	1.00[EUR][1000 genomes]
rs62517614	1.00[EUR][1000 genomes]
rs6473114	1.00[ASN][1000 genomes]
rs6994415	0.82[ASN][1000 genomes]
rs7005672	0.80[AMR][1000 genomes];0.99[ASN][1000 genomes]
rs7015950	1.00[ASN][1000 genomes]
rs7816983	0.86[ASN][1000 genomes]
rs7839253	1.00[ASN][1000 genomes]
rs7845433	0.83[ASN][1000 genomes]
rs896023	0.92[EUR][1000 genomes]
rs930671	0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51293800-51299200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

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