Variant report

Variant	rs6994415
Chromosome Location	chr8:51244997-51244998
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:58)

rs_ID	r²[population]
rs10086867	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10957894	0.85[EUR][1000 genomes]
rs1117213	0.84[ASN][1000 genomes]
rs11783674	0.82[AMR][1000 genomes]
rs12675994	0.82[ASN][1000 genomes]
rs12679464	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12681918	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13259996	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs13278343	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1375942	0.97[ASN][1000 genomes]
rs1375947	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1450135	0.83[ASN][1000 genomes]
rs1597427	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1597432	0.84[ASN][1000 genomes]
rs1597433	0.84[ASN][1000 genomes]
rs16914780	0.84[ASN][1000 genomes]
rs16914781	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1868638	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1868639	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1947254	0.84[ASN][1000 genomes]
rs2167157	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2840054	0.81[ASN][1000 genomes]
rs2923059	0.98[ASN][1000 genomes]
rs2923062	0.98[ASN][1000 genomes]
rs2957598	0.84[ASN][1000 genomes]
rs2957600	0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2957601	0.98[ASN][1000 genomes]
rs35063719	0.82[ASN][1000 genomes]
rs3919764	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4147344	0.98[ASN][1000 genomes]
rs4242460	0.82[ASN][1000 genomes]
rs4256602	0.81[ASN][1000 genomes]
rs4292700	0.98[ASN][1000 genomes]
rs4339654	0.82[ASN][1000 genomes]
rs4364645	0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4410921	0.82[ASN][1000 genomes]
rs4413786	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4529480	0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4534138	0.84[ASN][1000 genomes]
rs4604450	0.82[ASN][1000 genomes]
rs4618709	0.83[ASN][1000 genomes]
rs4639524	0.96[ASN][1000 genomes]
rs4873451	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873452	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4873453	0.80[ASN][1000 genomes]
rs62515888	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs6473114	0.82[ASN][1000 genomes]
rs6989084	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6990514	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6995334	0.89[EUR][1000 genomes]
rs7005672	0.81[ASN][1000 genomes]
rs7015950	0.82[ASN][1000 genomes]
rs7816983	0.96[ASN][1000 genomes]
rs7822367	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7834452	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7839253	0.82[ASN][1000 genomes]
rs7845433	0.97[ASN][1000 genomes]
rs983055	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916392	chr8:50827638-51395140	Enhancers Weak transcription Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv948436	chr8:51115028-51917504	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv1828291	chr8:51225111-51246823	ZNF genes & repeats Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv1832233	chr8:51225111-51256438	ZNF genes & repeats Flanking Active TSS Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
5	esv1827302	chr8:51225496-51246823	Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases
6	nsv831312	chr8:51239772-51422844	Weak transcription Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:51242000-51246800	Weak transcription	Liver	Liver
2	chr8:51243200-51271600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links